Browse Element(s) Details


OsAffx.3890.1.S1_at

Description tigr:9632.m02366
TID=OsAffx.3890.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2527010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25220OsAffx.32072.1.S1_x_at7/114+14555944..14556321hypothetical protein
LOC_Os04g25220OsAffx.32072.2.S1_x_at4/114+14555944..14556321hypothetical protein
LOC_Os04g25220OsAffx.32072.1.S1_at3/114+14555944..14556321hypothetical protein
LOC_Os04g25230OsAffx.26142.1.S1_at7/114+14561932..14563370hypothetical protein
LOC_Os04g25250OsAffx.26157.2.S1_s_at11/114+14566972..14569867hypothetical protein
LOC_Os04g25250OsAffx.26157.2.S1_at11/114+14566972..14569867hypothetical protein
LOC_Os04g25250OsAffx.26157.1.S1_x_at2/114+14566972..14569867hypothetical protein
LOC_Os04g25250OsAffx.26157.1.S1_at1/114+14566972..14569867hypothetical protein
LOC_Os04g25260OsAffx.3889.1.S1_at11/114+14574081..14574491hypothetical protein
LOC_Os04g25270OsAffx.3890.1.S1_at10/114+14580445..14581313hypothetical protein
LOC_Os04g25280Os.46012.2.S1_x_at2/114+14584065..14589755retrotransposon protein, putative, unclassified
LOC_Os04g25280Os.27088.1.A1_x_at1/114+14584065..14589755retrotransposon protein, putative, unclassified
LOC_Os04g25290OsAffx.26158.2.S1_x_at11/114+14598257..14598663hypothetical protein
LOC_Os04g25290OsAffx.26158.2.S1_at11/114+14598257..14598663hypothetical protein
LOC_Os04g25290OsAffx.26158.1.S1_x_at5/114+14598257..14598663hypothetical protein
LOC_Os04g25300OsAffx.26144.1.S1_x_at8/114+14599255..14601861Zinc knuckle family protein
LOC_Os04g25310OsAffx.26144.3.S1_at11/114+14604842..14605481hypothetical protein
LOC_Os04g25310OsAffx.26144.3.S1_s_at11/114+14604842..14605481hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3890.1.S1_at--549--7731Chr04:14580496..14580520 (25 bp)
GGTGGAGGGACCCACGCGGCGATGA
LOC_Os04g25270
OsAffx.3890.1.S1_at--292--4712Chr04:15201962..15201986 (25 bp)
GCGGCGATGAGCAACAGATCCGGCA
NONE
OsAffx.3890.1.S1_at--592--4052Chr04:15201966..15201990 (25 bp)
CGATGAGCAACAGATCCGGCAGCAT
NONE
OsAffx.3890.1.S1_at--264--8912Chr04:15201969..15201993 (25 bp)
TGAGCAACAGATCCGGCAGCATCCA
NONE
OsAffx.3890.1.S1_at--526--2492Chr04:15201974..15201998 (25 bp)
AACAGATCCGGCAGCATCCAGCGGT
NONE
OsAffx.3890.1.S1_at--915--1272Chr04:15201977..15202001 (25 bp)
AGATCCGGCAGCATCCAGCGGTGCG
NONE
OsAffx.3890.1.S1_at--1150--1512Chr04:14580535..14580559 (25 bp)
AGCATCCAGCGGTGCGGCCGAAGAT
LOC_Os04g25270
OsAffx.3890.1.S1_at--274--5372Chr04:15202036..15202060 (25 bp)
GAAGACGGCTGCGTCAACGACACCG
NONE
OsAffx.3890.1.S1_at--526--1932Chr04:15202040..15202064 (25 bp)
ACGGCTGCGTCAACGACACCGTCGT
NONE
OsAffx.3890.1.S1_at--77--4331NONE
CCATTGGCGCGAGAGAGCTGAGATT
NONE
OsAffx.3890.1.S1_at--616--1372Chr04:15202732..15202756 (25 bp)
AGAGCTGAGATTGATATGTCAAGCA
NONE
Target Sequence 
GGTGGAGGGACCCACGCGGCGATGAGCAACAGATCCGGCAGCATCCAGCGGTGCGGCCGAAGATGCCGGCGGTGCCAAGC
GGCGTGGCGGAAGACGGCTGCGTCAACGACACCGTCGTCGACGGTGGAGGCACAGCACCGGAGCTGCGCGGCCGCGGACG
CTGCCAACGCCATTGGCGCGAGAGAGCTGAGATTGATATGTCAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3890.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis