Browse Element(s) Details


OsAffx.26142.1.S1_at

Description tigr:9632.m02451
TID=OsAffx.26142.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2611010/11hypothetical protein
LOC_Os04g252307/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26090OsAffx.3891.1.S1_at7/114+15157595..15158661hypothetical protein
LOC_Os04g26100OsAffx.32072.1.S1_x_at7/114+15172019..15172396hypothetical protein
LOC_Os04g26100OsAffx.32072.2.S1_x_at4/114+15172019..15172396hypothetical protein
LOC_Os04g26100OsAffx.32072.1.S1_at3/114+15172019..15172396hypothetical protein
LOC_Os04g26110OsAffx.26142.1.S1_at10/114+15177984..15179449hypothetical protein
LOC_Os04g26120OsAffx.26157.2.S1_s_at11/114+15184224..15189030hypothetical protein
LOC_Os04g26120OsAffx.26157.1.S1_at11/114+15184224..15189030hypothetical protein
LOC_Os04g26120OsAffx.26157.1.S1_x_at11/114+15184224..15189030hypothetical protein
LOC_Os04g26120OsAffx.32083.1.S1_x_at1/114+15184224..15189030hypothetical protein
LOC_Os04g26120OsAffx.32083.2.S1_x_at1/114+15184224..15189030hypothetical protein
LOC_Os04g26120OsAffx.32083.3.S1_x_at1/114+15184224..15189030hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26142.1.S1_at--83--4552Chr04:15179377..15179401 (25 bp)
GCCCTGACCATCAGCAAGCACGAAA
LOC_Os04g26110
OsAffx.26142.1.S1_at--908--3231NONE
CAAGCACGAAAAGACCCTCAATGGT
NONE
OsAffx.26142.1.S1_at--783--3192Chr04:15178528..15178552 (25 bp)
CAATGGTCATGCCACCGCTGACATC
LOC_Os04g26110
OsAffx.26142.1.S1_at--759--3851Chr04:15178511..15178535 (25 bp)
CTGACATCCATGTTCGCCATAGAAT
LOC_Os04g26110
OsAffx.26142.1.S1_at--386--3571Chr04:15178494..15178518 (25 bp)
CATAGAATCAATGGTGACTTCGTCA
LOC_Os04g26110
OsAffx.26142.1.S1_at--890--811Chr04:15178484..15178508 (25 bp)
ATGGTGACTTCGTCACACTCGCCAA
LOC_Os04g26110
OsAffx.26142.1.S1_at--233--3892Chr04:15178120..15178144 (25 bp)
CTGTCATAGTATCCGGCCTTGACCT
LOC_Os04g26110
OsAffx.26142.1.S1_at--1013--10752Chr04:15178102..15178126 (25 bp)
TTGACCTCCATGATATCCTCGTGGT
LOC_Os04g26110
OsAffx.26142.1.S1_at--944--3512Chr04:15178094..15178118 (25 bp)
CATGATATCCTCGTGGTCGCCAACT
LOC_Os04g26110
OsAffx.26142.1.S1_at--562--9192Chr04:15178038..15178062 (25 bp)
TGCCTCCGATTTCGACCTCAAGATT
LOC_Os04g26110
OsAffx.26142.1.S1_at--559--1752Chr04:15178024..15178048 (25 bp)
ACCTCAAGATTGTCATCGCTGCCGG
LOC_Os04g26110
Target Sequence 
GCCCTGACCATCAGCAAGCACGAAAAGACCCTCAATGGTCATGCCACCGCTGACATCCATGTTCGCCATAGAATCAATGG
TGACTTCGTCACACTCGCCAACCCCACGGTGTGCAATCCTNNNACNNCNNNNNNTGNAGAGTTCAANCCTGTCATAGTAT
CCGGCCTTGACCTCCATGATATCCTCGTGGTCGCCAACTCTGCCGACGCCATCACCGGCGTCTCCACGACTGCCTCCGAT
TTCGACCTCAAGATTGTCATCGCTGCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26142.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis