Browse Element(s) Details


OsAffx.26157.2.S1_s_at

Description tigr:9632.m02364
TID=OsAffx.26157.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2525011/11hypothetical protein
LOC_Os04g2612011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25210OsAffx.26141.4.S1_x_at11/114+14551798..14553794hAT family dimerisation domain containing protein, expressed
LOC_Os04g25210OsAffx.26141.4.S1_at11/114+14551798..14553794hAT family dimerisation domain containing protein, expressed
LOC_Os04g25210OsAffx.26141.3.S1_x_at7/114+14551798..14553794hAT family dimerisation domain containing protein, expressed
LOC_Os04g25220OsAffx.32072.1.S1_x_at7/114+14555944..14556321hypothetical protein
LOC_Os04g25220OsAffx.32072.2.S1_x_at4/114+14555944..14556321hypothetical protein
LOC_Os04g25220OsAffx.32072.1.S1_at3/114+14555944..14556321hypothetical protein
LOC_Os04g25230OsAffx.26142.1.S1_at7/114+14561932..14563370hypothetical protein
LOC_Os04g25250OsAffx.26157.2.S1_s_at11/114+14566972..14569867hypothetical protein
LOC_Os04g25250OsAffx.26157.2.S1_at11/114+14566972..14569867hypothetical protein
LOC_Os04g25250OsAffx.26157.1.S1_x_at2/114+14566972..14569867hypothetical protein
LOC_Os04g25250OsAffx.26157.1.S1_at1/114+14566972..14569867hypothetical protein
LOC_Os04g25260OsAffx.3889.1.S1_at11/114+14574081..14574491hypothetical protein
LOC_Os04g25270OsAffx.3890.1.S1_at10/114+14580445..14581313hypothetical protein
LOC_Os04g25280Os.46012.2.S1_x_at2/114+14584065..14589755retrotransposon protein, putative, unclassified
LOC_Os04g25280Os.27088.1.A1_x_at1/114+14584065..14589755retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26157.2.S1_s_at--1000--2392Chr04:15186956..15186980 (25 bp)
AAAAACACTTACTCAGGCCCATCGT
LOC_Os04g26120
OsAffx.26157.2.S1_s_at--889--9892Chr04:15186947..15186971 (25 bp)
TACTCAGGCCCATCGTTATGTCTTA
LOC_Os04g26120
OsAffx.26157.2.S1_s_at--858--8392Chr04:15186941..15186965 (25 bp)
GGCCCATCGTTATGTCTTACGACAT
LOC_Os04g26120
OsAffx.26157.2.S1_s_at--526--752Chr04:15186930..15186954 (25 bp)
ATGTCTTACGACATCTTGATGAAAT
LOC_Os04g26120
OsAffx.26157.2.S1_s_at--538--2832Chr04:15186784..15186808 (25 bp)
AAGTCAGTTTTCACTTCTTTTGAAT
LOC_Os04g26120
OsAffx.26157.2.S1_s_at--45--10512Chr04:15186775..15186799 (25 bp)
TTCACTTCTTTTGAATCTGACAAGT
LOC_Os04g26120
OsAffx.26157.2.S1_s_at--837--2212Chr04:15186756..15186780 (25 bp)
ACAAGTTGATTAATGAGCGATTCCA
LOC_Os04g26120
OsAffx.26157.2.S1_s_at--810--3732Chr04:15185307..15185331 (25 bp)
CTAAGAGTTGGCTTCTCCATCAGTT
LOC_Os04g26120
OsAffx.26157.2.S1_s_at--814--5552Chr04:15185027..15185051 (25 bp)
GAAACCAAGAGAATGCACTCAAGCA
LOC_Os04g26120
OsAffx.26157.2.S1_s_at--88--2012Chr04:15185011..15185035 (25 bp)
ACTCAAGCATCCACACACTTTAGGA
LOC_Os04g26120
OsAffx.26157.2.S1_s_at--600--7852Chr04:15184817..15184841 (25 bp)
GGTAGATATGTTACTGATGCTACTC
LOC_Os04g26120
Target Sequence 
AAAAACACTTACTCAGGCCCATCGTTATGTCTTACGACATCTTGATGAAATAGAGGATTTTCGTAGAGAATTTCTAGAGG
AGGAGAAGAGAAAACAAAAGAAGTCAGTTTTCACTTCTTTTGAATCTGACAAGTTGATTAATGAGCGATTCCATGATTGG
CTATACCACAAGAGAAAGTTTGCAATTGATGGGAGAGCTAAGAGTTGGCTTCTCCATCAGTTAGATGTGCCCAACACTGT
TGATGAATCTCAATGGCCTACACTAGTTTCCTACTGGTACTCAAAGGACTCTAAGAAAATCAGTGACAGAAACCAAGAGA
ATGCACTCAAGCATCCACACACTTTAGGAAGAAAGAGTTTTACAAGAAAGAGAAAAGAACTGGAAGTTAATGAGGTGGAG
GTGGACCGAGAAACCTTCTTTGATGAATGCCATAAGACAAAAGACGGTAGATATGTTACTGATGCTACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26157.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis