Browse Element(s) Details


OsAffx.26141.3.S1_x_at

Description tigr:9635.m02797
TID=OsAffx.26141.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2876010/11hAT family dimerisation domain containing protein
LOC_Os01g430109/11hAT family dimerisation domain containing protein, expressed
LOC_Os04g252107/11hAT family dimerisation domain containing protein, expressed
LOC_Os04g466907/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28710NANA7+16809299..1680962860S acidic ribosomal protein P2B, putative
LOC_Os07g28720Os.55731.1.S1_at3/117+16814814..16815104hypothetical protein
LOC_Os07g28730NANA7+16817436..16817795retrotransposon protein, putative, unclassified
LOC_Os07g28740NANA7+16818531..16820587retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g28750NANA7+16825711..16828102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g28760OsAffx.26141.3.S1_x_at10/117+16831584..16835745hAT family dimerisation domain containing protein
LOC_Os07g28760OsAffx.26141.4.S1_x_at7/117+16831584..16835745hAT family dimerisation domain containing protein
LOC_Os07g28760OsAffx.26141.4.S1_at4/117+16831584..16835745hAT family dimerisation domain containing protein
LOC_Os07g28770Os.45976.1.S1_at2/117+16838430..16842074transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28770Os.45976.1.S1_x_at2/117+16838430..16842074transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28780Os.46306.1.S1_x_at3/117+16845108..16848037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28790Os.50313.1.S1_at11/117+16855498..16860933PAP_fibrillin family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26141.3.S1_x_at--565--10273Chr07:16834799..16834823 (25 bp)
TTTGCAGTTGCTTTGGTTCTAGACC
LOC_Os07g28760
OsAffx.26141.3.S1_x_at--149--8834Chr07:16834842..16834866 (25 bp)
TGATTAACTACACATTCCCTGCTTT
LOC_Os07g28760
OsAffx.26141.3.S1_x_at--510--8214Chr07:16834906..16834930 (25 bp)
GGAATCCACATTGAAATCTTTGCAT
LOC_Os07g28760
OsAffx.26141.3.S1_x_at--806--9892Chr07:16834990..16835014 (25 bp)
TACTAGTACATCTCTAGGCACTACT
LOC_Os07g28760
OsAffx.26141.3.S1_x_at--658--2033Chr07:16835012..16835036 (25 bp)
ACTAGTAGTCATTTCTCTGCTGCTA
LOC_Os07g28760
OsAffx.26141.3.S1_x_at--678--9111Chr07:16835029..16835053 (25 bp)
TGCTGCTAACCAATTTCATGAGTAT
LOC_Os07g28760
OsAffx.26141.3.S1_x_at--259--5274Chr07:16835065..16835089 (25 bp)
GAATGCTGCTAGTCTTCCTAAGTCA
LOC_Os07g28760
OsAffx.26141.3.S1_x_at--325--6834Chr07:16835139..16835163 (25 bp)
GTTTCAATCTACTTCAGTGGTGGAG
LOC_Os07g28760
OsAffx.26141.3.S1_x_at--727--7934Chr07:16835206..16835230 (25 bp)
GGATATTCTTACTATTCCCATCACC
LOC_Os07g28760
OsAffx.26141.3.S1_x_at--664--394Chr07:16835225..16835249 (25 bp)
ATCACCTCAGTCTCATCTGAATCAG
LOC_Os07g28760
OsAffx.26141.3.S1_x_at--1048--4871NONE
GCTTTGGCATATAGCATAGCATCAA
NONE
Target Sequence 
TTTGCAGTTGCTTTGGTTCTAGACCCAAGGTTTAAGATGGGTATGATTAACTACACATTCCCTGCTTTGTATGAAGAAAC
TGTACTTCCTAAGAAACTTGCAAATGTGGAATCCACATTGAAATCTTTGCATGCATCATATGAAAGTGAACTCCAGAGCA
CATCAAAGGAAAATGATGCAACCACTCAATCTACTAGTACATCTCTAGGCACTACTAGTAGTCATTTCTCTGCTGCTAAC
CAATTTCATGAGTATATGAAATCAAAGAATGCTGCTAGTCTTCCTAAGTCAGATTTAAAGAGGTACTTAGATGATCCTGT
TGAGGATATTCCTGCAAAAAGTTTCAATCTACTTCAGTGGTGGAGGATGAATGAATTAAAGTATCCAATTGTGGCAAAGT
TGGCCAAGGATATTCTTACTATTCCCATCACCTCAGTCTCATCTGAATCAGCTTTCAGCACAGGGGGTCGAGTGATTAGT
GTTTATCGCAGCTCTTTACTCCCATCAACAGTACAAGCTTTGGCATATAGCATAGCATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26141.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis