Browse Element(s) Details


OsAffx.26141.4.S1_x_at

Description tigr:9632.m02360
TID=OsAffx.26141.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2521011/11hAT family dimerisation domain containing protein, expressed
LOC_Os01g430109/11hAT family dimerisation domain containing protein, expressed
LOC_Os07g287607/11hAT family dimerisation domain containing protein
LOC_Os04g466906/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25180OsAffx.26159.1.S1_at10/114+14530956..14531884hypothetical protein
LOC_Os04g25190Os.9665.1.S1_at11/114+14534210..14534900Pollen allergen family protein, expressed
LOC_Os04g25210OsAffx.26141.4.S1_x_at11/114+14551798..14553794hAT family dimerisation domain containing protein, expressed
LOC_Os04g25210OsAffx.26141.4.S1_at11/114+14551798..14553794hAT family dimerisation domain containing protein, expressed
LOC_Os04g25210OsAffx.26141.3.S1_x_at7/114+14551798..14553794hAT family dimerisation domain containing protein, expressed
LOC_Os04g25220OsAffx.32072.1.S1_x_at7/114+14555944..14556321hypothetical protein
LOC_Os04g25220OsAffx.32072.2.S1_x_at4/114+14555944..14556321hypothetical protein
LOC_Os04g25220OsAffx.32072.1.S1_at3/114+14555944..14556321hypothetical protein
LOC_Os04g25230OsAffx.26142.1.S1_at7/114+14561932..14563370hypothetical protein
LOC_Os04g25250OsAffx.26157.2.S1_s_at11/114+14566972..14569867hypothetical protein
LOC_Os04g25250OsAffx.26157.2.S1_at11/114+14566972..14569867hypothetical protein
LOC_Os04g25250OsAffx.26157.1.S1_x_at2/114+14566972..14569867hypothetical protein
LOC_Os04g25250OsAffx.26157.1.S1_at1/114+14566972..14569867hypothetical protein
LOC_Os04g25260OsAffx.3889.1.S1_at11/114+14574081..14574491hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26141.4.S1_x_at--22--10751Chr04:14552506..14552530 (25 bp)
TTGCAGTTGCTTTGGTTGTAGACCC
LOC_Os04g25210
OsAffx.26141.4.S1_x_at--150--8834Chr07:16834842..16834866 (25 bp)
TGATTAACTACACATTCCCTGCTTT
LOC_Os07g28760
OsAffx.26141.4.S1_x_at--716--3052Chr04:27465990..27466014 (25 bp)
AATCTACTAGTACATCTCTGGGCAC
LOC_Os04g46690
OsAffx.26141.4.S1_x_at--657--2033Chr07:16835012..16835036 (25 bp)
ACTAGTAGTCATTTCTCTGCTGCTA
LOC_Os07g28760
OsAffx.26141.4.S1_x_at--396--9492Chr01:24821440..24821464 (25 bp)
TCTGCTGCTAGCCAATTTCATGAGT
LOC_Os01g43010
OsAffx.26141.4.S1_x_at--260--5274Chr07:16835065..16835089 (25 bp)
GAATGCTGCTAGTCTTCCTAAGTCA
LOC_Os07g28760
OsAffx.26141.4.S1_x_at--728--7934Chr07:16835206..16835230 (25 bp)
GGATATTCTTACTATTCCCATCACC
LOC_Os07g28760
OsAffx.26141.4.S1_x_at--665--394Chr07:16835225..16835249 (25 bp)
ATCACCTCAGTCTCATCTGAATCAG
LOC_Os07g28760
OsAffx.26141.4.S1_x_at--244--1113Chr07:16835281..16835300 (20 bp)
AGTGATTATCGCAGCTCTTTACTCC
LOC_Os07g28760
OsAffx.26141.4.S1_x_at--522--9853Chr07:16835310..16835471 (25 bp)
TACAAGCTTTGGAGGATGATACTAA
LOC_Os07g28760
OsAffx.26141.4.S1_x_at--969--9733Chr04:27466473..27466497 (25 bp)
TAATTCTATTATCCTTGTCCCAACT
LOC_Os04g46690
Target Sequence 
TTGCAGTTGCTTTGGTTGTAGACCCAAGGTTTAAGATGGGTATGATTAACTACACATTCCCTGCTTTGTATGAAGAAACT
GTACTTCCTAAGAAACTTACAAATGTGGAATCCACATTGAAATCTTTGCATGCATCATATGAAAGTGAACTCCAGAGCAC
ATCAAAGGAAAATGATGCCACCATTCAATCTACTAGTACATCTCTGGGCACTACTAGTAGTCATTTCTCTGCTGCTAGCC
AATTTCATGAGTATATGAAATCAAAGAATGCTGCTAGTCTTCCTAAGTCAGATTTAAAGAGGTACTTAGATGATCCTGTT
GAGGATATTCCTGCAAAAAGTTTCAATCTACTTCAGTGGTGGAGGATGAATGAATTAAAGTATCCAATTGTGGCAAAGTT
GGCCAAGGATATTCTTACTATTCCCATCACCTCAGTCTCATCTGAATCAGCTTTCAGCACAGGGGGTCGAGTGATTAGTG
ATTATCGCAGCTCTTTACTCCCATCAACAGTACAAGCTTTGGAGGATGATACTAATTCTATTATCCTTGTCCCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26141.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis