Browse Element(s) Details


OsAffx.26141.4.S1_at

Description tigr:9632.m02360
TID=OsAffx.26141.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2521011/11hAT family dimerisation domain containing protein, expressed
LOC_Os01g4301011/11hAT family dimerisation domain containing protein, expressed
LOC_Os04g466909/11hAT family dimerisation domain containing protein
LOC_Os07g287604/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25180OsAffx.26159.1.S1_at10/114+14530956..14531884hypothetical protein
LOC_Os04g25190Os.9665.1.S1_at11/114+14534210..14534900Pollen allergen family protein, expressed
LOC_Os04g25210OsAffx.26141.4.S1_x_at11/114+14551798..14553794hAT family dimerisation domain containing protein, expressed
LOC_Os04g25210OsAffx.26141.4.S1_at11/114+14551798..14553794hAT family dimerisation domain containing protein, expressed
LOC_Os04g25210OsAffx.26141.3.S1_x_at7/114+14551798..14553794hAT family dimerisation domain containing protein, expressed
LOC_Os04g25220OsAffx.32072.1.S1_x_at7/114+14555944..14556321hypothetical protein
LOC_Os04g25220OsAffx.32072.2.S1_x_at4/114+14555944..14556321hypothetical protein
LOC_Os04g25220OsAffx.32072.1.S1_at3/114+14555944..14556321hypothetical protein
LOC_Os04g25230OsAffx.26142.1.S1_at7/114+14561932..14563370hypothetical protein
LOC_Os04g25250OsAffx.26157.2.S1_s_at11/114+14566972..14569867hypothetical protein
LOC_Os04g25250OsAffx.26157.2.S1_at11/114+14566972..14569867hypothetical protein
LOC_Os04g25250OsAffx.26157.1.S1_x_at2/114+14566972..14569867hypothetical protein
LOC_Os04g25250OsAffx.26157.1.S1_at1/114+14566972..14569867hypothetical protein
LOC_Os04g25260OsAffx.3889.1.S1_at11/114+14574081..14574491hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26141.4.S1_at--449--3453Chr07:16835307..16835468 (25 bp)
CAGTACAAGCTTTGGAGGATGATAC
LOC_Os07g28760
OsAffx.26141.4.S1_at--523--9853Chr07:16835310..16835471 (25 bp)
TACAAGCTTTGGAGGATGATACTAA
LOC_Os07g28760
OsAffx.26141.4.S1_at--595--7994Chr07:16835460..16835484 (25 bp)
GGATGATACTAATTCTATTATCCTT
LOC_Os07g28760
OsAffx.26141.4.S1_at--68--3754Chr07:16835468..16835491 (24 bp)
CTAATTCTATTATCCTTGTCCCAAC
LOC_Os07g28760
OsAffx.26141.4.S1_at--968--9733Chr04:27466473..27466497 (25 bp)
TAATTCTATTATCCTTGTCCCAACT
LOC_Os04g46690
OsAffx.26141.4.S1_at--278--3153Chr04:27466474..27466498 (25 bp)
AATTCTATTATCCTTGTCCCAACTC
LOC_Os04g46690
OsAffx.26141.4.S1_at--670--113Chr04:27466475..27466499 (25 bp)
ATTCTATTATCCTTGTCCCAACTCA
LOC_Os04g46690
OsAffx.26141.4.S1_at--776--10573Chr04:27466476..27466500 (25 bp)
TTCTATTATCCTTGTCCCAACTCAA
LOC_Os04g46690
OsAffx.26141.4.S1_at--558--9553Chr04:27466477..27466501 (25 bp)
TCTATTATCCTTGTCCCAACTCAAG
LOC_Os04g46690
OsAffx.26141.4.S1_at--1158--10173Chr04:27466479..27466503 (25 bp)
TATTATCCTTGTCCCAACTCAAGCT
LOC_Os04g46690
OsAffx.26141.4.S1_at--708--153Chr04:27466480..27466504 (25 bp)
ATTATCCTTGTCCCAACTCAAGCTT
LOC_Os04g46690
Target Sequence 
CAGTACAAGCTTTGGAGGATGATACTAATTCTATTATCCTTGTCCCAACTCAAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26141.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis