Browse Element(s) Details


OsAffx.26157.1.S1_x_at

Description tigr:9632.m02452
TID=OsAffx.26157.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2612011/11hypothetical protein
LOC_Os04g252502/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26100OsAffx.32072.1.S1_x_at7/114+15172019..15172396hypothetical protein
LOC_Os04g26100OsAffx.32072.2.S1_x_at4/114+15172019..15172396hypothetical protein
LOC_Os04g26100OsAffx.32072.1.S1_at3/114+15172019..15172396hypothetical protein
LOC_Os04g26110OsAffx.26142.1.S1_at10/114+15177984..15179449hypothetical protein
LOC_Os04g26120OsAffx.26157.2.S1_s_at11/114+15184224..15189030hypothetical protein
LOC_Os04g26120OsAffx.26157.1.S1_at11/114+15184224..15189030hypothetical protein
LOC_Os04g26120OsAffx.26157.1.S1_x_at11/114+15184224..15189030hypothetical protein
LOC_Os04g26120OsAffx.32083.1.S1_x_at1/114+15184224..15189030hypothetical protein
LOC_Os04g26120OsAffx.32083.2.S1_x_at1/114+15184224..15189030hypothetical protein
LOC_Os04g26120OsAffx.32083.3.S1_x_at1/114+15184224..15189030hypothetical protein
LOC_Os04g26130OsAffx.425.1.S1_at1/114+15205782..15207483transposon protein, putative, Mariner sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26157.1.S1_x_at--181--1352Chr04:15185304..15185328 (25 bp)
AGAGTTGGCTTCTCCATCAGTTAGA
LOC_Os04g26120
OsAffx.26157.1.S1_x_at--965--5111Chr04:15185204..15185228 (25 bp)
GCAAACGGTGCCCAACACTGTTGAT
LOC_Os04g26120
OsAffx.26157.1.S1_x_at--1097--651Chr04:15185181..15185205 (25 bp)
ATGAATCTCGATGGCCTACACTAGT
LOC_Os04g26120
OsAffx.26157.1.S1_x_at--1103--9852Chr04:15185165..15185189 (25 bp)
TACACTAGTTTCCTACTGGTACTCA
LOC_Os04g26120
OsAffx.26157.1.S1_x_at--59--6511Chr04:15184813..15184837 (25 bp)
GATATGTTACTGATGCTACTCCAGA
LOC_Os04g26120
OsAffx.26157.1.S1_x_at--350--2391Chr04:15184790..15184814 (25 bp)
GAAAAACGTGGTCTAACATATCTTT
LOC_Os04g26120
OsAffx.26157.1.S1_x_at--610--10111Chr04:15184461..15184761 (25 bp)
TATGCTAAGAAAATATCCCGAGGAC
LOC_Os04g26120
OsAffx.26157.1.S1_x_at--26--3131Chr04:15184436..15184460 (25 bp)
AATTTGTTGGCTAGGCTGCCACCAT
LOC_Os04g26120
OsAffx.26157.1.S1_x_at--368--10451Chr04:15184408..15184432 (25 bp)
TTACTAGGCTCATCCCAACAAGTGA
LOC_Os04g26120
OsAffx.26157.1.S1_x_at--453--6751Chr04:15184271..15184295 (25 bp)
GTTCAGGCACCAAATACTGCGCCAT
LOC_Os04g26120
OsAffx.26157.1.S1_x_at--996--9151Chr04:15184254..15184278 (25 bp)
TGCGCCATCTCCCAGTCAGAGAGCA
LOC_Os04g26120
Target Sequence 
AGAGTTGGCTTCTCCATCAGTTAGATGGTAAATGGAGGCAATACAAGGGAAAACTGAAAGGAAAATATTACAAGCCTAAC
TTACCTATGGAACGAGTATTGCAAACGGTGCCCAACACTGTTGATGAATCTCGATGGCCTACACTAGTTTCCTACTGGTA
CTCAAAGGACTCTAAGAAAATCAGTGACAGAAACCAAGAGAATGCACTCAAGCATCCACACACTTTAGGAAGAAAGAGTT
TTACAAGAAAGAGAAAAGAACTGGAAGTTAATGGGGTGGAGGTGGACCGAGAAACCTTCTTTGATGAATGCCATAAGACA
AAAGATGGTAGATATGTTACTGATGCTACTCCAGAAAAACGTGGTCTAACATATCTTTTTTTAACTGTTGGTGCAACAAA
ATACACTATGCTAAGAAAATATCCCGAGGACAATTTGTTGGCTAGGCTGCCACCATCCCTTACTAGGCTCATCCCAACAA
GTGAGGTTAATCAAAACCAAGAAGTTCAGGCACCAAATACTGCGCCATCTCCCAGTCAGAGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26157.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis