Browse Element(s) Details


OsAffx.32072.1.S1_at

Description tigr:9631.m03469
TID=OsAffx.32072.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1402011/11hypothetical protein
LOC_Os03g3626010/11hypothetical protein
LOC_Os01g399803/11hypothetical protein
LOC_Os04g252203/11hypothetical protein
LOC_Os04g261003/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13980Os.25696.2.S1_x_at11/117+7980847..7987587Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplast precursor, putative, expressed
LOC_Os07g13980OsAffx.16251.1.S1_at11/117+7980847..7987587Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplast precursor, putative, expressed
LOC_Os07g13990OsAffx.22409.1.S1_at11/117+7989621..7993123hypothetical protein
LOC_Os07g13990OsAffx.10179.1.S1_at11/117+7989621..7993123hypothetical protein
LOC_Os07g13990OsAffx.28435.2.S1_s_at1/117+7989621..7993123hypothetical protein
LOC_Os07g14000OsAffx.24637.1.S1_at10/117+7995445..7999788hypothetical protein
LOC_Os07g14000OsAffx.23361.2.S1_x_at2/117+7995445..7999788hypothetical protein
LOC_Os07g14000OsAffx.27394.1.S1_at1/117+7995445..7999788hypothetical protein
LOC_Os07g14000Os.13016.1.S1_a_at1/117+7995445..7999788hypothetical protein
LOC_Os07g14010NANA7+8000563..8002072retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14020OsAffx.32072.1.S1_at11/117+8003973..8005096hypothetical protein
LOC_Os07g14020OsAffx.32072.1.S1_x_at9/117+8003973..8005096hypothetical protein
LOC_Os07g14020OsAffx.32072.2.S1_x_at3/117+8003973..8005096hypothetical protein
LOC_Os07g14030OsAffx.28437.1.S1_s_at11/117+8007631..8008161Pathogenesis-related protein PRB1-3 precursor, putative
LOC_Os07g14030OsAffx.28437.3.S1_s_at1/117+8007631..8008161Pathogenesis-related protein PRB1-3 precursor, putative
LOC_Os07g14040Os.54287.1.S1_at2/117+8011433..8013743hypothetical protein
LOC_Os07g14050NANA7+8015154..8017947retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g14060Os.31497.2.S1_x_at1/117+8018079..8020852retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g14070OsAffx.28437.3.S1_s_at11/117+8021848..8024046SCP-like extracellular protein
LOC_Os07g14070OsAffx.28437.1.S1_s_at11/117+8021848..8024046SCP-like extracellular protein
LOC_Os07g14070OsAffx.28437.2.S1_at11/117+8021848..8024046SCP-like extracellular protein
LOC_Os07g14070OsAffx.28437.3.S1_at11/117+8021848..8024046SCP-like extracellular protein
LOC_Os07g14070Os.7975.1.S1_x_at1/117+8021848..8024046SCP-like extracellular protein
LOC_Os07g14070OsAffx.31576.1.S1_at1/117+8021848..8024046SCP-like extracellular protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32072.1.S1_at--35--4615Chr07:8004283..8004307 (25 bp)
GCGACATCACAAGGCGTCGTGGGAT
LOC_Os07g14020
OsAffx.32072.1.S1_at--337--2095Chr07:8004286..8004310 (25 bp)
ACATCACAAGGCGTCGTGGGATAGA
LOC_Os07g14020
OsAffx.32072.1.S1_at--386--94110Chr12:23097637..23097746 (25 bp)
TCGTGGGATAGAGGTTGCGGCCGGC
NONE
OsAffx.32072.1.S1_at--84--7673Chr07:8004994..8005018 (25 bp)
GGGATCATTTTCCTCGTATTCTCGT
LOC_Os07g14020
OsAffx.32072.1.S1_at--106--6433Chr07:8004996..8005020 (25 bp)
GATCATTTTCCTCGTATTCTCGTAT
LOC_Os07g14020
OsAffx.32072.1.S1_at--460--3593Chr07:8004999..8005023 (25 bp)
CATTTTCCTCGTATTCTCGTATATA
LOC_Os07g14020
OsAffx.32072.1.S1_at--1105--10653Chr07:8005003..8005027 (25 bp)
TTCCTCGTATTCTCGTATATACGCG
LOC_Os07g14020
OsAffx.32072.1.S1_at--636--9393Chr07:8005007..8005031 (25 bp)
TCGTATTCTCGTATATACGCGCAAT
LOC_Os07g14020
OsAffx.32072.1.S1_at--698--113Chr07:8005011..8005035 (25 bp)
ATTCTCGTATATACGCGCAATCTGT
LOC_Os07g14020
OsAffx.32072.1.S1_at--1073--3493Chr07:8005037..8005061 (25 bp)
CATGGTGAGGCATCGATAAGAAATC
LOC_Os07g14020
OsAffx.32072.1.S1_at--1065--6194Chr10:14839966..14839988 (22 bp)
GAGGCATCGATAAGAAATCAACTGC
NONE
Target Sequence 
GCGACATCACAAGGCGTCGTGGGATAGAGGTTGCGGCCGGCGAGGCAAGGACGTCGTGGCAGCAGNNANNNNTNTNNNNN
NNGANNNNNNNCNNNNNNNNNNGNNNGNNNTCCTTTCCAAGTTGGAATGATACAGNGGGATCATTTTCCTCGTATTCTCG
TATATACGCGCAATCTGTNCATGGTGAGGCATCGATAAGAAATCAACTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis