Browse Element(s) Details


OsAffx.28437.3.S1_s_at

Description gb:NM_186828.1
DB_XREF= gi:34900741
GEN=OJ1341_A08.29
TID=OsAffx.28437.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1341_A08.29 (OJ1341_A08.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1407011/11SCP-like extracellular protein
LOC_Os07g140301/11Pathogenesis-related protein PRB1-3 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14000OsAffx.24637.1.S1_at10/117+7995445..7999788hypothetical protein
LOC_Os07g14000OsAffx.23361.2.S1_x_at2/117+7995445..7999788hypothetical protein
LOC_Os07g14000OsAffx.27394.1.S1_at1/117+7995445..7999788hypothetical protein
LOC_Os07g14000Os.13016.1.S1_a_at1/117+7995445..7999788hypothetical protein
LOC_Os07g14010NANA7+8000563..8002072retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g14020OsAffx.32072.1.S1_at11/117+8003973..8005096hypothetical protein
LOC_Os07g14020OsAffx.32072.1.S1_x_at9/117+8003973..8005096hypothetical protein
LOC_Os07g14020OsAffx.32072.2.S1_x_at3/117+8003973..8005096hypothetical protein
LOC_Os07g14030OsAffx.28437.1.S1_s_at11/117+8007631..8008161Pathogenesis-related protein PRB1-3 precursor, putative
LOC_Os07g14030OsAffx.28437.3.S1_s_at1/117+8007631..8008161Pathogenesis-related protein PRB1-3 precursor, putative
LOC_Os07g14040Os.54287.1.S1_at2/117+8011433..8013743hypothetical protein
LOC_Os07g14050NANA7+8015154..8017947retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g14060Os.31497.2.S1_x_at1/117+8018079..8020852retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g14070OsAffx.28437.3.S1_s_at11/117+8021848..8024046SCP-like extracellular protein
LOC_Os07g14070OsAffx.28437.1.S1_s_at11/117+8021848..8024046SCP-like extracellular protein
LOC_Os07g14070OsAffx.28437.2.S1_at11/117+8021848..8024046SCP-like extracellular protein
LOC_Os07g14070OsAffx.28437.3.S1_at11/117+8021848..8024046SCP-like extracellular protein
LOC_Os07g14070Os.7975.1.S1_x_at1/117+8021848..8024046SCP-like extracellular protein
LOC_Os07g14070OsAffx.31576.1.S1_at1/117+8021848..8024046SCP-like extracellular protein
LOC_Os07g14080Os.29859.1.S1_at11/117+8031063..8032877Transferase family protein, expressed
LOC_Os07g14090Os.21241.1.S1_at11/117+8035809..8041065MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os07g14100Os.6180.1.S1_at10/117+8041797..8043495pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009627biological_processsystemic acquired resistance
GO:0009723biological_processresponse to ethylene stimulus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28437.3.S1_s_at--823--8472Chr07:8021885..8021909 (25 bp)
TGGCGGTGGCCATTGCGACCATCGT
LOC_Os07g14070
OsAffx.28437.3.S1_s_at--312--71Chr07:8021896..8021920 (25 bp)
ATTGCGACCATCGTGGTGGCGACCA
LOC_Os07g14070
OsAffx.28437.3.S1_s_at--223--6231Chr07:8021928..8021952 (25 bp)
GATGGCCGCCGACACTACACCAGAT
LOC_Os07g14070
OsAffx.28437.3.S1_s_at--206--9871Chr07:8021943..8021967 (25 bp)
TACACCAGATCCTCACATTTTTTAC
LOC_Os07g14070
OsAffx.28437.3.S1_s_at--866--1271Chr07:8021949..8021973 (25 bp)
AGATCCTCACATTTTTTACGGCATA
LOC_Os07g14070
OsAffx.28437.3.S1_s_at--103--4291Chr07:8021953..8021977 (25 bp)
CCTCACATTTTTTACGGCATATCTG
LOC_Os07g14070
OsAffx.28437.3.S1_s_at--597--10471Chr07:8021964..8021988 (25 bp)
TTACGGCATATCTGTGATGGGCTTT
LOC_Os07g14070
OsAffx.28437.3.S1_s_at--995--4951Chr07:8021969..8021993 (25 bp)
GCATATCTGTGATGGGCTTTAGCAT
LOC_Os07g14070
OsAffx.28437.3.S1_s_at--1106--791Chr07:8021980..8022372 (25 bp)
ATGGGCTTTAGCATTGAAACAAGAG
LOC_Os07g14070
OsAffx.28437.3.S1_s_at--827--7892Chr07:8022456..8022480 (25 bp)
GGTTCGGCGGCGTTGGGCGACGGCT
LOC_Os07g14070
OsAffx.28437.3.S1_s_at--409--9271Chr07:8022653..8022677 (25 bp)
TCCTCCTTCTCTTATTTCCGATCTG
LOC_Os07g14070
Target Sequence 
TGGCGGTGGCCATTGCGACCATCGTGGTGGCGACCACCACGACGATGGCCGCCGACACTACACCAGATCCTCACATTTTT
TACGGCATATCTGTGATGGGCTTTAGCATTGAAACAAGAGGGGAGGCTCTTGCGGCGGCGGCGGAGGACCCGACGGCCCC
CGGGAGAGGCAGCGGCGTGGCGACGACGGCGGCGCGCGGCGGTGGTTCGGCGGCGTTGGGCGACGGCTCAGCGGCGCGTG
GCAGCGGCGGTGGTGCGGAGGCGCAGCGTCGAGGTGGTGCGGCGGCGGCGCTGGGCGGCAGCGGTGGTGCGGAGGCAAAG
CGGCGAGGTGGTGCGGCGGCGCTAGGCGGCGAGCGGCGTCGGCGGTACCCACATCCTCCTCCCCCTTCTTTCTCCCCTCC
TCCTCCTTCTCTTATTTCCGATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28437.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis