Browse Element(s) Details


OsAffx.23361.2.S1_x_at

Description tigr:9629.m02310
TID=OsAffx.23361.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2394011/11hypothetical protein
LOC_Os07g140002/11hypothetical protein
LOC_Os08g380702/11hypothetical protein
LOC_Os07g374801/11expressed protein
LOC_Os02g153801/11hAT family dimerisation domain containing protein
LOC_Os06g294401/11expressed protein
LOC_Os01g053501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23880Os.4969.1.S1_at11/111+13424984..13426167expressed protein
LOC_Os01g23890NANA1+13426497..13427555hypothetical protein
LOC_Os01g23900OsAffx.22851.1.S1_at11/111+13430389..13434957retrotransposon protein, putative, unclassified
LOC_Os01g23910OsAffx.5895.1.S1_at3/111+13437389..13438368hypothetical protein
LOC_Os01g23910Os.14894.3.A1_at1/111+13437389..13438368hypothetical protein
LOC_Os01g23920OsAffx.11181.1.S1_at11/111+13442060..13443074hypothetical protein
LOC_Os01g23930Os.38395.4.S1_x_at9/111+13443925..13449960transposon protein, putative, Mutator sub-class
LOC_Os01g23930Os.38395.3.S1_x_at9/111+13443925..13449960transposon protein, putative, Mutator sub-class
LOC_Os01g23930Os.38395.2.S1_x_at8/111+13443925..13449960transposon protein, putative, Mutator sub-class
LOC_Os01g23940OsAffx.23361.2.S1_at11/111+13450471..13452240hypothetical protein
LOC_Os01g23940OsAffx.23361.2.S1_x_at11/111+13450471..13452240hypothetical protein
LOC_Os01g23940Os.56255.1.S1_x_at1/111+13450471..13452240hypothetical protein
LOC_Os01g23940Os.29803.1.S1_x_at1/111+13450471..13452240hypothetical protein
LOC_Os01g23960OsAffx.19776.1.S1_at1/111+13458296..13465137retrotransposon protein, putative, unclassified
LOC_Os01g23960OsAffx.20615.1.S1_at1/111+13458296..13465137retrotransposon protein, putative, unclassified
LOC_Os01g23970OsAffx.23363.1.S1_at11/111+13470386..13473432serine/threonine kinase, putative
LOC_Os01g23970OsAffx.16867.1.S1_at1/111+13470386..13473432serine/threonine kinase, putative
LOC_Os01g23970OsAffx.28164.2.S1_at1/111+13470386..13473432serine/threonine kinase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23361.2.S1_x_at--939--2491Chr01:13451604..13451628 (25 bp)
AACATGTCTCATCGCCAGTATCGCC
LOC_Os01g23940
OsAffx.23361.2.S1_x_at--813--9851Chr01:13451643..13451667 (25 bp)
TACACTTCGATCTTCTTCGGCAACC
LOC_Os01g23940
OsAffx.23361.2.S1_x_at--469--10731Chr01:13451733..13451757 (25 bp)
TTGCTAGTCTCCTCCAATATTGGCG
LOC_Os01g23940
OsAffx.23361.2.S1_x_at--658--4633Chr08:23984373..23984397 (25 bp)
GCGTATGGTTCATGGTGGTCCCCTA
NONE
OsAffx.23361.2.S1_x_at--77--7872Chr06:24879813..24879837 (25 bp)
GGTATTGGCAACACCATTGCGCGCG
NONE
OsAffx.23361.2.S1_x_at--20--7151Chr01:13451934..13451958 (25 bp)
GTCTTCGTCTCTAGCACGTCTTCGC
LOC_Os01g23940
OsAffx.23361.2.S1_x_at--985--771Chr01:13452014..13452038 (25 bp)
ATGTGCTCCCTGTGGCTCGGCTATC
LOC_Os01g23940
OsAffx.23361.2.S1_x_at--623--1555Chr08:23984665..23984689 (25 bp)
AGCTTCCTGACTTCGGCTACATCGA
LOC_Os08g38070
OsAffx.23361.2.S1_x_at--225--8313Chr08:23984747..23984770 (24 bp)
GGCTACGTCGACAATGGCACAAAGT
LOC_Os08g38070
OsAffx.23361.2.S1_x_at--1008--5310Chr07:7996411..7996435 (25 bp)
ATCCGTATTGAGCACTCTTGCCGGT
LOC_Os07g14000
OsAffx.23361.2.S1_x_at--478--9571Chr01:13452186..13452210 (25 bp)
TCTTCTACAGTCGAAGTGTCTGCGC
LOC_Os01g23940
Target Sequence 
AACATGTCTCATCGCCAGTATCGCCGTATCTTCCTCGACTACACTTCGATCTTCTTCGGCAACCGCGTGCTGCTCCGGCA
ATTCTCCCTCTACGCCGTTCTTGCGCCGCGACCGTCTCGGAGGCCTTCTTTGCTAGTCTCCTCCAATATTGGCGTATGGT
TCATGGTGGTCCCCTACCTCGTCCGCGCGGTATTGGCAACACCATTGCGCGCGTTCGTCCCGAGTTGTCCCCGGGTCTGC
TCTTCGGCGTCATCTTCCTCCACGATCGCCGCGATTGTGTCACCGTCTTCGTCTCTAGCACGTCTTCGCGCGCCATTGGT
CCACGACGCCCTCCTGTGCGTCCACAACCACTCTACGGCGCCTCATGTGCTCCCTGTGGCTCGGCTATCTCGACATCAGC
TTCCTGACTTCGGCTACATCGACCACGGCTACTCTACGCACGGCTTCATCGACCACGGCTCTCTCGGCTCCTTCGCTTTG
GCTACGTCGACAATGGCACAAAGTGCTATCATCCGTATTGAGCACTCTTGCCGGTTTCTTCTACAGTCGAAGTGTCTGCG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23361.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis