Browse Element(s) Details


OsAffx.22851.1.S1_at

Description gb:NM_183942.1
DB_XREF= gi:34895011
GEN=OJ1111_G12.12
TID=OsAffx.22851.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OJ1111_G12.12), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2390011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23850OsAffx.2070.2.S1_at11/111+13405234..13407106TMP repeat family protein, expressed
LOC_Os01g23870Os.35110.1.S1_a_at11/111+13419372..13421048expressed protein
LOC_Os01g23880Os.4969.1.S1_at11/111+13424984..13426167expressed protein
LOC_Os01g23890NANA1+13426497..13427555hypothetical protein
LOC_Os01g23900OsAffx.22851.1.S1_at11/111+13430389..13434957retrotransposon protein, putative, unclassified
LOC_Os01g23910OsAffx.5895.1.S1_at3/111+13437389..13438368hypothetical protein
LOC_Os01g23910Os.14894.3.A1_at1/111+13437389..13438368hypothetical protein
LOC_Os01g23920OsAffx.11181.1.S1_at11/111+13442060..13443074hypothetical protein
LOC_Os01g23930Os.38395.4.S1_x_at9/111+13443925..13449960transposon protein, putative, Mutator sub-class
LOC_Os01g23930Os.38395.3.S1_x_at9/111+13443925..13449960transposon protein, putative, Mutator sub-class
LOC_Os01g23930Os.38395.2.S1_x_at8/111+13443925..13449960transposon protein, putative, Mutator sub-class
LOC_Os01g23940OsAffx.23361.2.S1_at11/111+13450471..13452240hypothetical protein
LOC_Os01g23940OsAffx.23361.2.S1_x_at11/111+13450471..13452240hypothetical protein
LOC_Os01g23940Os.56255.1.S1_x_at1/111+13450471..13452240hypothetical protein
LOC_Os01g23940Os.29803.1.S1_x_at1/111+13450471..13452240hypothetical protein
LOC_Os01g23960OsAffx.19776.1.S1_at1/111+13458296..13465137retrotransposon protein, putative, unclassified
LOC_Os01g23960OsAffx.20615.1.S1_at1/111+13458296..13465137retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22851.1.S1_at--100--10351Chr01:13430930..13430954 (25 bp)
TTTACTCCAGTACGTTACAGCACCA
LOC_Os01g23900
OsAffx.22851.1.S1_at--928--1491Chr01:13430912..13430936 (25 bp)
AGCACCATTTGGCTCGAGCTCAGAA
LOC_Os01g23900
OsAffx.22851.1.S1_at--229--4671Chr01:13430878..13430902 (25 bp)
GCAGGTGGCTGATTCTAAACGTACT
LOC_Os01g23900
OsAffx.22851.1.S1_at--220--10111Chr01:13430761..13430785 (25 bp)
TATGAAGTATTTCGGTCCCTTTCCT
LOC_Os01g23900
OsAffx.22851.1.S1_at--960--4871Chr01:13430712..13430736 (25 bp)
GCTTATAAGTTGCAGCTTCCACCAG
LOC_Os01g23900
OsAffx.22851.1.S1_at--47--6751Chr01:13430679..13430703 (25 bp)
GTTCATTCTGTTTTCCATGTTTCTC
LOC_Os01g23900
OsAffx.22851.1.S1_at--488--9631Chr01:13430632..13430656 (25 bp)
TCATGTGCCCGTTTATACTTCTCTA
LOC_Os01g23900
OsAffx.22851.1.S1_at--538--2051Chr01:13430616..13430640 (25 bp)
ACTTCTCTACCTGATGTGGTTGCTT
LOC_Os01g23900
OsAffx.22851.1.S1_at--557--7971Chr01:13430581..13430605 (25 bp)
GGATCTGATCCCTACTGAAATTCTG
LOC_Os01g23900
OsAffx.22851.1.S1_at--61--791Chr01:13430459..13430483 (25 bp)
ATGTGATTCGTACTCGTTTTCCAGC
LOC_Os01g23900
OsAffx.22851.1.S1_at--502--10231Chr01:13430425..13430449 (25 bp)
TTTGGGACAAGCTGGATCTCCGGCG
LOC_Os01g23900
Target Sequence 
TTTACTCCAGTACGTTACAGCACCATTTGGCTCGAGCTCAGAATCATATGAAGCAGGTGGCTGATTCTAAACGTACTTTA
CGGGTGTTTCAAGTTGGGGATTCAGTTTTTCTGAAGTTACAACCATATGCTCAAACATCTGTGGTGAATCGACCTTGTCA
CAAGTTGGCTATGAAGTATTTCGGTCCCTTTCCTATTTTGGAGCGTGTGGGATCGGTGGCTTATAAGTTGCAGCTTCCAC
CAGCCAGTCAAGTTCATTCTGTTTTCCATGTTTCTCAGTTGAAGCCATCTGTTCCTTCTCATGTGCCCGTTTATACTTCT
CTACCTGATGTGGTTGCTTTAGATGTGGAGGATCTGATCCCTACTGAAATTCTGGATTGCCGTATGGTCAAGAAAGGGAA
TGCTGCCATTGTGCAAGTGCGAGTTCGCTGGGGTTCATTGCCAGATAATATGGCGACATGGGAGGATTATGATGTGATTC
GTACTCGTTTTCCAGCAGTTTCAGCTTTGGGACAAGCTGGATCTCCGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis