Browse Element(s) Details


OsAffx.2070.2.S1_at

Description tigr:9629.m02301
TID=OsAffx.2070.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=TMP repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2385011/11TMP repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23820NANA1+13384405..13384863retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23830NANA1+13393241..13394572hypothetical protein
LOC_Os01g23840OsAffx.22853.1.S1_at11/111+13396899..13397713transposon protein, putative, unclassified
LOC_Os01g23850OsAffx.2070.2.S1_at11/111+13405234..13407106TMP repeat family protein, expressed
LOC_Os01g23870Os.35110.1.S1_a_at11/111+13419372..13421048expressed protein
LOC_Os01g23880Os.4969.1.S1_at11/111+13424984..13426167expressed protein
LOC_Os01g23890NANA1+13426497..13427555hypothetical protein
LOC_Os01g23900OsAffx.22851.1.S1_at11/111+13430389..13434957retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2070.2.S1_at--420--9231Chr01:13405641..13405665 (25 bp)
TCCAGATCGGGCAGGCGCTTGTCTC
LOC_Os01g23850
OsAffx.2070.2.S1_at--885--9131Chr01:13405567..13405591 (25 bp)
TGCGTCCCGCTCACCATGATGAGGG
LOC_Os01g23850
OsAffx.2070.2.S1_at--439--8431Chr01:13405528..13405552 (25 bp)
GGCCTGATGATTTCGCGAGCAGCAT
LOC_Os01g23850
OsAffx.2070.2.S1_at--513--1511Chr01:13405511..13405535 (25 bp)
AGCAGCATTCGAATCACTCCCGGAG
LOC_Os01g23850
OsAffx.2070.2.S1_at--513--9531Chr01:13405485..13405509 (25 bp)
TCTACTTCCAGATACTGCGGTCCGC
LOC_Os01g23850
OsAffx.2070.2.S1_at--789--3751Chr01:13405387..13405411 (25 bp)
CTCTTCGGCGCATCATCATGATCAA
LOC_Os01g23850
OsAffx.2070.2.S1_at--1129--711Chr01:13405370..13405394 (25 bp)
ATGATCAATACTACCTCTCTGTCGT
LOC_Os01g23850
OsAffx.2070.2.S1_at--455--7211Chr01:13405350..13405374 (25 bp)
GTCGTCAGTAATGTCTGGCACTCTG
LOC_Os01g23850
OsAffx.2070.2.S1_at--248--2011Chr01:13405331..13405355 (25 bp)
ACTCTGGCCTCTATTTGTGATACTA
LOC_Os01g23850
OsAffx.2070.2.S1_at--19--8791Chr01:13405304..13405328 (25 bp)
TGTTAACTATGTGAGCTGTGCTACC
LOC_Os01g23850
OsAffx.2070.2.S1_at--133--4231Chr01:13405281..13405305 (25 bp)
CCGATCAGCGTGTGTGTTGGGTTAA
LOC_Os01g23850
Target Sequence 
TCCAGATCGGGCAGGCGCTTGTCTCCGCCGTGTCAAGCGGCGCGCACTACCTGTTCGTCCCCTTCGGGCAGTGCTGCGTC
CCGCTCACCATGATGAGGGCCCCGGGCGCCGCCGGCCTGATGATTTCGCGAGCAGCATTCGAATCACTCCCGGAGCTCTA
CTTCCAGATACTGCGGTCCGCCGGACGCGTGGTGGCCGCCGCCGTCTTCCGCGCGCCGTCCATCGCGAGGGCATGCGCGG
CGCCGGTCGCCGCCCTCTTCGGCGCATCATCATGATCAATACTACCTCTCTGTCGTCAGTAATGTCTGGCACTCTGGCCT
CTATTTGTGATACTAGCTGTTAACTATGTGAGCTGTGCTACCGATCAGCGTGTGTGTTGGGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2070.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis