Browse Element(s) Details


OsAffx.22853.1.S1_at

Description tigr:9629.m02300
TID=OsAffx.22853.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2384011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23800OsAffx.2069.1.S1_at11/111+13372480..13374717hypothetical protein
LOC_Os01g23810OsAffx.23360.1.S1_at11/111+13378745..13379590expressed protein
LOC_Os01g23820NANA1+13384405..13384863retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g23830NANA1+13393241..13394572hypothetical protein
LOC_Os01g23840OsAffx.22853.1.S1_at11/111+13396899..13397713transposon protein, putative, unclassified
LOC_Os01g23850OsAffx.2070.2.S1_at11/111+13405234..13407106TMP repeat family protein, expressed
LOC_Os01g23870Os.35110.1.S1_a_at11/111+13419372..13421048expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22853.1.S1_at--874--1031Chr01:13397624..13397648 (25 bp)
AGGTCCATCTCATCAACAATCTTCT
LOC_Os01g23840
OsAffx.22853.1.S1_at--1069--6231Chr01:13397491..13397515 (25 bp)
GATGGACAGCCGCAAGAATATTCTT
LOC_Os01g23840
OsAffx.22853.1.S1_at--775--111Chr01:13397472..13397496 (25 bp)
ATTCTTGTATTCAATCTCCCAGTCC
LOC_Os01g23840
OsAffx.22853.1.S1_at--534--4351Chr01:13397454..13397478 (25 bp)
CCAGTCCAGTTGCTACATCTAACAG
LOC_Os01g23840
OsAffx.22853.1.S1_at--1132--6191Chr01:13397276..13397300 (25 bp)
GAGGCTCAACAATTTTCGAACCATT
LOC_Os01g23840
OsAffx.22853.1.S1_at--571--6371Chr01:13397129..13397153 (25 bp)
GATCCTTTGATAAAGACTCCTCGAG
LOC_Os01g23840
OsAffx.22853.1.S1_at--444--1991Chr01:13397114..13397138 (25 bp)
ACTCCTCGAGCTGTGACTAGAACTG
LOC_Os01g23840
OsAffx.22853.1.S1_at--169--7651Chr01:13397073..13397097 (25 bp)
GGGAGTTACCCTAAATCGAGTGCTA
LOC_Os01g23840
OsAffx.22853.1.S1_at--42--2611Chr01:13396998..13397022 (25 bp)
AACCCTTGAAACCTGTCACTTGTTG
LOC_Os01g23840
OsAffx.22853.1.S1_at--100--2071Chr01:13396981..13397005 (25 bp)
ACTTGTTGCCATCACAACGACGGAT
LOC_Os01g23840
OsAffx.22853.1.S1_at--1019--711Chr01:13396945..13396969 (25 bp)
ATGATTACTACGTTCAGACTCCCTT
LOC_Os01g23840
Target Sequence 
AGGTCCATCTCATCAACAATCTTCTGTTCCAGTTGTTACATCTAGCAGAAAAGATGGACAGCCGCAAGAATATTCTTGTA
TTCAATCTCCCAGTCCAGTTGCTACATCTAACAGAGAACACATAATACCTAATTGGGTACCACAAATTGAAATGACATTT
AGTAGCGTTGTTGAGGCTCAACAATTTTCGAACCATTATGGCGGTCAAATTGGTTTTGATGTTAGAAAACGATTTGAGAA
TACTAGCAAACTTGATGGCAAGGCTATATCAGCTGAATTTGTTTGCAACAAGGAAGGCTTTAGAACGAACGATAAAAGAG
ATCCTTTGATAAAGACTCCTCGAGCTGTGACTAGAACTGGATGCAAAGTTCATATGGGAGTTACCCTAAATCGAGTGCTA
GGAAAATATGAGATACATGATTTGGTTCTTGAGCATAATCAAATACTTCAAACCCTTGAAACCTGTCACTTGTTGCCATC
ACAACGACGGATAACTGAAGTGCATGATTACTACGTTCAGACTCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis