Browse Element(s) Details


Os.35110.1.S1_a_at

Description gb:AK121837.1
DB_XREF= gi:37991460
TID=Os.35110.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.35110 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1111_G12.9 (OJ1111_G12.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033100K08, full insert sequence.
FL= gb:AK068939.1 gb:AK121837.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2387011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g23830NANA1+13393241..13394572hypothetical protein
LOC_Os01g23840OsAffx.22853.1.S1_at11/111+13396899..13397713transposon protein, putative, unclassified
LOC_Os01g23850OsAffx.2070.2.S1_at11/111+13405234..13407106TMP repeat family protein, expressed
LOC_Os01g23870Os.35110.1.S1_a_at11/111+13419372..13421048expressed protein
LOC_Os01g23880Os.4969.1.S1_at11/111+13424984..13426167expressed protein
LOC_Os01g23890NANA1+13426497..13427555hypothetical protein
LOC_Os01g23900OsAffx.22851.1.S1_at11/111+13430389..13434957retrotransposon protein, putative, unclassified
LOC_Os01g23910OsAffx.5895.1.S1_at3/111+13437389..13438368hypothetical protein
LOC_Os01g23910Os.14894.3.A1_at1/111+13437389..13438368hypothetical protein
LOC_Os01g23920OsAffx.11181.1.S1_at11/111+13442060..13443074hypothetical protein
LOC_Os01g23930Os.38395.4.S1_x_at9/111+13443925..13449960transposon protein, putative, Mutator sub-class
LOC_Os01g23930Os.38395.3.S1_x_at9/111+13443925..13449960transposon protein, putative, Mutator sub-class
LOC_Os01g23930Os.38395.2.S1_x_at8/111+13443925..13449960transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35110.1.S1_a_at--1064--10811Chr01:13420057..13420081 (25 bp)
TTGTCCTCTTATTCGTCGCCGCCAA
LOC_Os01g23870
Os.35110.1.S1_a_at--818--8271Chr01:13419926..13419950 (25 bp)
GGCATGGACATCTCGCGAGCAGCGT
LOC_Os01g23870
Os.35110.1.S1_a_at--411--1511Chr01:13419909..13419933 (25 bp)
AGCAGCGTACGAGTCACTCCCGGAG
LOC_Os01g23870
Os.35110.1.S1_a_at--953--8531Chr01:13419766..13419790 (25 bp)
TGGATAAACGCCTCCCTCCAAGCGA
LOC_Os01g23870
Os.35110.1.S1_a_at--647--8331Chr01:13419723..13419747 (25 bp)
GGCTGCATACCCTGACACTGTCACT
LOC_Os01g23870
Os.35110.1.S1_a_at--520--3331Chr01:13419708..13419732 (25 bp)
CACTGTCACTGACGTGTCGGACTCA
LOC_Os01g23870
Os.35110.1.S1_a_at--640--7191Chr01:13419693..13419717 (25 bp)
GTCGGACTCACGTTCCATTGGCCAG
LOC_Os01g23870
Os.35110.1.S1_a_at--110--3611Chr01:13419678..13419702 (25 bp)
CATTGGCCAGCATGTCAGCGAAGAT
LOC_Os01g23870
Os.35110.1.S1_a_at--599--5351Chr01:13419659..13419683 (25 bp)
GAAGATGATGACATGTCCGACTCAT
LOC_Os01g23870
Os.35110.1.S1_a_at--529--771Chr01:13419647..13419671 (25 bp)
ATGTCCGACTCATGTTCCATAGTAG
LOC_Os01g23870
Os.35110.1.S1_a_at--25--151Chr01:13419629..13419653 (25 bp)
ATAGTAGACCCATACCACGGCGAGC
LOC_Os01g23870
Target Sequence 
TTGTCCTCTTATTCGTCGCCGCCAAGGTGGTCGGCAAGGTGCTCGACCGGGTCCTCCCCGCCTGCGCGCGGTGCTGCTAC
GACGACCGCGTCACCACCACCGCCACCACCATGAGCGCTCCGGACGCCGCCGGCATGGACATCTCGCGAGCAGCGTACGA
GTCACTCCCGGAGCTCTACGCCCAGATACTGCGCTCCGCCGGCCCCGTCGTGGCCGCAGCCGTCTTCTGCTCGCATCCCG
TCGCGTGGGCGTGCGCGGCGCCGGTCGCCGCCCTCTTCCTCTTCCGCGCCCTGGATAAACGCCTCCCTCCAAGCGAACCC
TGCGTCCTCCCTGCGGCTGCATACCCTGACACTGTCACTGACGTGTCGGACTCACGTTCCATTGGCCAGCATGTCAGCGA
AGATGATGACATGTCCGACTCATGTTCCATAGTAGACCCATACCACGGCGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35110.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis