Browse Element(s) Details


OsAffx.20615.1.S1_at

Description gb:NM_195406.1
DB_XREF= gi:37532171
TID=OsAffx.20615.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0056A15.8), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g125906/11retrotransposon protein, putative, unclassified
LOC_Os10g125805/11retrotransposon protein, putative, unclassified
LOC_Os05g209402/11retrotransposon protein, putative, unclassified
LOC_Os02g252601/11retrotransposon protein, putative, unclassified
LOC_Os04g013701/11retrotransposon protein, putative, unclassified
LOC_Os09g029401/11retrotransposon protein, putative, unclassified
LOC_Os07g225501/11retrotransposon protein, putative, unclassified
LOC_Os02g211001/11retrotransposon protein, putative, unclassified
LOC_Os12g150801/11retrotransposon protein, putative, unclassified
LOC_Os08g126501/11retrotransposon protein, putative, unclassified
LOC_Os01g239601/11retrotransposon protein, putative, unclassified
LOC_Os10g247001/11retrotransposon protein, putative, unclassified
LOC_Os02g297601/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g12548NANA10+6744644..6752028transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g12560NANA10+6755343..6756473transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g12570Os.45976.1.S1_at5/1110+6761110..6770587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g12570Os.45976.1.S1_x_at2/1110+6761110..6770587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g12580OsAffx.20615.1.S1_at5/1110+6771483..6773096retrotransposon protein, putative, unclassified
LOC_Os10g12590OsAffx.20615.1.S1_at6/1110+6775059..6777486retrotransposon protein, putative, unclassified
LOC_Os10g12590OsAffx.22699.1.S1_x_at2/1110+6775059..6777486retrotransposon protein, putative, unclassified
LOC_Os10g12610OsAffx.20614.1.S1_x_at10/1110+6784721..6785701hypothetical protein
LOC_Os10g12620Os.46710.2.S1_at11/1110+6788192..6796329Protein kinase domain containing protein, expressed
LOC_Os10g12620Os.46710.1.S1_at11/1110+6788192..6796329Protein kinase domain containing protein, expressed
LOC_Os10g12620Os.46710.3.S1_x_at11/1110+6788192..6796329Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20615.1.S1_at--730--3931Chr10:6775328..6775352 (25 bp)
CGGCTACCTATTAAGCCAGGATTTA
LOC_Os10g12590
OsAffx.20615.1.S1_at--231--4432Chr07:12689418..12689442 (25 bp)
GCCAGGATTTAAACCACATCAGCAA
LOC_Os07g22550
OsAffx.20615.1.S1_at--406--3811Chr10:6775288..6775312 (25 bp)
CTCCAAGGAGGTGTAAGGCCCAGAT
LOC_Os10g12590
OsAffx.20615.1.S1_at--866--895Chr12:8603352..8603561 (25 bp)
AGGCCCAGATGTATGATGCTATCAA
LOC_Os12g15080
OsAffx.20615.1.S1_at--876--4874Chr10:12367705..12367726 (22 bp)
GCTATCAAGGCTGAAATTACTCGAT
LOC_Os10g24700
OsAffx.20615.1.S1_at--126--9915Chr05:12292711..12292730 (20 bp)
TACTCGATTATATGATGCTGTTCTC
LOC_Os05g20940
OsAffx.20615.1.S1_at--588--6671Chr10:6772902..6772926 (25 bp)
GTTGCAGTTGCTTAAGGAGGTCGAA
LOC_Os10g12580
OsAffx.20615.1.S1_at--173--7811Chr10:6772884..6772908 (25 bp)
GGTCGAAGCCAATGCTATGGAGATC
LOC_Os10g12580
OsAffx.20615.1.S1_at--360--291Chr10:6772759..6772783 (25 bp)
ATAGTTTTCGGCCAGTGACTTTGAA
LOC_Os10g12580
OsAffx.20615.1.S1_at--1105--5691Chr10:6772743..6772767 (25 bp)
GACTTTGAAGTATGTCTCTCGGGAG
LOC_Os10g12580
OsAffx.20615.1.S1_at--81--6151Chr10:6772652..6772676 (25 bp)
GAGGTGGAGTTAGCTGCAATCACAG
LOC_Os10g12580
Target Sequence 
CGGCTACCTATTAAGCCAGGATTTAAACCACATCAGCAACCTCCAAGGAGGTGTAAGGCCCAGATGTATGATGCTATCAA
GGCTGAAATTACTCGATTATATGATGCTGTTCTCAAGGGGTTGCAGTTGCTTAAGGAGGTCGAAGCCAATGCTATGGAGA
TCATGGGGGATTCTTTGTTGGTGATCAATCAATTGGCAGGAGAGTATGAATGCAAGAATGATGTATTGATGATCTACAAC
GAGAAGTGCCGGGAATTGATGAATAGTTTTCGGCCAGTGACTTTGAAGTATGTCTCTCGGGAGCAGAACGTTGAAGCTAA
TAACTTGGCTCAGGGGGCATCAGGATACAAGCCGATGATGAAGGATATTGAGGTGGAGTTAGCTGCAATCACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20615.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis