Browse Element(s) Details


Os.56255.1.S1_x_at

Description gb:AK109697.1
DB_XREF= gi:32994906
TID=Os.56255.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56255 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-F02, full insert sequence.
FL= gb:AK109697.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3748011/11expressed protein
LOC_Os08g380704/11hypothetical protein
LOC_Os10g183902/11hypothetical protein
LOC_Os02g153802/11hAT family dimerisation domain containing protein
LOC_Os06g294402/11expressed protein
LOC_Os01g239401/11hypothetical protein
LOC_Os01g053501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37420OsAffx.5561.1.S1_s_at11/117+22414480..22415518Short-chain type dehydrogenase/reductase, putative, expressed
LOC_Os07g37430OsAffx.28800.1.S1_x_at8/117+22416251..22417102hypothetical protein
LOC_Os07g37440OsAffx.16597.1.S1_at11/117+22417314..22418394hypothetical protein
LOC_Os07g37454OsAffx.28801.1.S1_s_at11/117+22425967..22427944Organic cation transporter 3, putative, expressed
LOC_Os07g37454Os.55618.1.S2_at11/117+22425967..22427944Organic cation transporter 3, putative, expressed
LOC_Os07g37454Os.55618.1.S1_at11/117+22425967..22427944Organic cation transporter 3, putative, expressed
LOC_Os07g37470Os.47463.1.S1_x_at3/117+22433886..22439389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g37470Os.14491.2.S1_x_at2/117+22433886..22439389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g37480Os.56255.1.S1_x_at11/117+22440418..22442682expressed protein
LOC_Os07g37480Os.56255.1.S1_at10/117+22440418..22442682expressed protein
LOC_Os07g37480OsAffx.23361.2.S1_x_at1/117+22440418..22442682expressed protein
LOC_Os07g37490NANA7+22447647..22447913hypothetical protein
LOC_Os07g37500NANA7+22452438..22452806hypothetical protein
LOC_Os07g37510Os.46485.1.S1_at1/117+22455222..22456835Major Facilitator Superfamily protein
LOC_Os07g37520Os.40360.1.S1_x_at1/117+22463955..22465440hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56255.1.S1_x_at--152--101116Chr11:24126831..24126851 (21 bp)
TATGATTCATGGTGGTCCCCTGTCT
NONE
Os.56255.1.S1_x_at--246--6872Chr01:30985927..30986086 (25 bp)
GTATTGGCAACACCGGCACGCGCGT
NONE
Os.56255.1.S1_x_at--890--2375Chr06:30559463..30559487 (25 bp)
AAACCCTGTGTGACGTCTCGTCCTT
NONE
Os.56255.1.S1_x_at--1085--105119Chr12:5939066..5939090 (25 bp)
TTCACGGTTCGACTACATCGGCTCT
NONE
Os.56255.1.S1_x_at--387--9551Chr07:22440652..22440676 (25 bp)
TCTTTCGGCTCCTTCATTTTGGCTA
LOC_Os07g37480
Os.56255.1.S1_x_at--819--154Chr08:23984744..23984766 (23 bp)
ATTTTGGCTACGTCGACAATGGCAC
LOC_Os08g38070
Os.56255.1.S1_x_at--906--10158Chr10:9015962..9015986 (25 bp)
TATCATCCGTGTTGAGCACTCTTGC
LOC_Os10g18390
Os.56255.1.S1_x_at--910--7235Chr08:23984821..23985223 (25 bp)
GTCCGCGTTGCTCACGCTTGAAATG
LOC_Os08g38070
Os.56255.1.S1_x_at--457--7471Chr07:22440494..22440518 (25 bp)
GTGTGGACTCATTCCATATCATAAT
LOC_Os07g37480
Os.56255.1.S1_x_at--788--412Chr07:22440476..22440501 (25 bp)
ATCATAATTCTTCTTATCTCCTCCC
LOC_Os07g37480
Os.56255.1.S1_x_at--442--4835Chr07:854374..854398 (25 bp)
GCTCAATACAATCAATCCACGTTAC
NONE
Target Sequence 
TATGATTCATGGTGGTCCCCTGTCTCGCCCGCGCGGTATTGGCAACACCGGCACGCGCGTTCGTCCCGAGTTGTCCCGGG
GTCTGGCAAACCCTGTGTGACGTCTCGTCCTTCACGGTTCGACTACATCGGCTCTTCGGCATCAACTTCCTCAACGACTG
CCGCGATCGCGTCACCGTCATCATCTCCTGCACATCCTCGCGCACCTTGGTCCACGACCACTCTACAACGCCCCATGCGC
GTCCTGTGGCTCGGCTACCTCGACATCAGCTTCCTGACATCGGCTACATCGACCACGGCTACTCTACGCACGGCTTCATC
GACCACGGCTCTTTCGGCTCCTTCATTTTGGCTACGTCGACAATGGCACAAAGGGCTATCATCCGTGTTGAGCACTCTTG
CCGGTTTCTTCTCCAGTCCAAGTGTCCGCGTTGCTCACGCTTGAAATGCGGGGGGATGTTTGAGTCATATTAGGATATGA
TTGATTTGTGTGGACTCATTCCATATCATAATTCTTCTTATCTCCTCCCCATGTACTCCTATATATACCGCCCCCCTGAG
GCTCAATACAATCAATCCACGTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56255.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis