Browse Element(s) Details


OsAffx.28801.1.S1_s_at

Description tigr:9635.m03713
TID=OsAffx.28801.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=major facilitator superfamily protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3745411/11Organic cation transporter 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37380NANA7+22402345..22403543expressed protein
LOC_Os07g37390OsAffx.5560.1.S1_at9/117+22408440..22409259hypothetical protein
LOC_Os07g37400Os.8724.1.S1_at11/117+22409532..22411377F-box domain containing protein, expressed
LOC_Os07g37410OsAffx.28340.3.S1_x_at11/117+22413096..22413977hypothetical protein
LOC_Os07g37410OsAffx.28340.1.S1_x_at1/117+22413096..22413977hypothetical protein
LOC_Os07g37420OsAffx.5561.1.S1_s_at11/117+22414480..22415518Short-chain type dehydrogenase/reductase, putative, expressed
LOC_Os07g37430OsAffx.28800.1.S1_x_at8/117+22416251..22417102hypothetical protein
LOC_Os07g37440OsAffx.16597.1.S1_at11/117+22417314..22418394hypothetical protein
LOC_Os07g37454OsAffx.28801.1.S1_s_at11/117+22425967..22427944Organic cation transporter 3, putative, expressed
LOC_Os07g37454Os.55618.1.S2_at11/117+22425967..22427944Organic cation transporter 3, putative, expressed
LOC_Os07g37454Os.55618.1.S1_at11/117+22425967..22427944Organic cation transporter 3, putative, expressed
LOC_Os07g37470Os.47463.1.S1_x_at3/117+22433886..22439389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g37470Os.14491.2.S1_x_at2/117+22433886..22439389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g37480Os.56255.1.S1_x_at11/117+22440418..22442682expressed protein
LOC_Os07g37480Os.56255.1.S1_at10/117+22440418..22442682expressed protein
LOC_Os07g37480OsAffx.23361.2.S1_x_at1/117+22440418..22442682expressed protein
LOC_Os07g37490NANA7+22447647..22447913hypothetical protein
LOC_Os07g37500NANA7+22452438..22452806hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28801.1.S1_s_at--799--1911Chr07:22426278..22426302 (25 bp)
ACGGGATGCCGCTCAACGTCGGCAA
LOC_Os07g37454
OsAffx.28801.1.S1_s_at--954--3231Chr07:22426291..22426315 (25 bp)
CAACGTCGGCAACCTGGGCTCCAAC
LOC_Os07g37454
OsAffx.28801.1.S1_s_at--473--2631Chr07:22426313..22426337 (25 bp)
AACCTCTACCTCAGCGTGACGTACA
LOC_Os07g37454
OsAffx.28801.1.S1_s_at--430--9971Chr07:22426319..22426343 (25 bp)
TACCTCAGCGTGACGTACAACGCGC
LOC_Os07g37454
OsAffx.28801.1.S1_s_at--433--1631Chr07:22426325..22426349 (25 bp)
AGCGTGACGTACAACGCGCTGGCCG
LOC_Os07g37454
OsAffx.28801.1.S1_s_at--352--4151Chr07:22426447..22426471 (25 bp)
CGCGTGCGTGGCCATCCCGGAGGGC
LOC_Os07g37454
OsAffx.28801.1.S1_s_at--303--6151Chr07:22426493..22426517 (25 bp)
GAGGTGCTCTCCTTCTTCGCGACGT
LOC_Os07g37454
OsAffx.28801.1.S1_s_at--647--10551Chr07:22426505..22426529 (25 bp)
TTCTTCGCGACGTGCACGGCGTTCA
LOC_Os07g37454
OsAffx.28801.1.S1_s_at--902--10511Chr07:22426526..22426550 (25 bp)
TTCAACATCATCCTCATGTACTCCA
LOC_Os07g37454
OsAffx.28801.1.S1_s_at--396--571Chr07:22426535..22426559 (25 bp)
ATCCTCATGTACTCCATCGAGCTGT
LOC_Os07g37454
OsAffx.28801.1.S1_s_at--798--8051Chr07:22426654..22426678 (25 bp)
GGAGCGGAGCTTCTGGTCGTTCGGG
LOC_Os07g37454
Target Sequence 
ACGGGATGCCGCTCAACGTCGGCAACCTGGGCTCCAACCTCTACCTCAGCGTGACGTACAACGCGCTGGCCGAGTTCCCG
TCGTCCGTCCTCTCGTGGCTCCTCATGGGCAGGATCAACCGGCGGAGCTCGGTGGTCGCGCTCACCGCGGCGGCGGGGGT
GTGCAGCCTCGCGTGCGTGGCCATCCCGGAGGGCACCGGCGGGCGGATGGCCGCCGAGGTGCTCTCCTTCTTCGCGACGT
GCACGGCGTTCAACATCATCCTCATGTACTCCATCGAGCTGTTCCCGACGTCGGTGCGCAACTCGGCGGTGGGGATGGTG
CGCCAGGCGCTCGTGCTCGGCGGCGTGGCGGCGCCCATGCTCGTGGCGCTCGGCCGGGAGCGGAGCTTCTGGTCGTTCGG
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28801.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis