Browse Element(s) Details


OsAffx.16597.1.S1_at

Description tigr:9635.m03712
TID=OsAffx.16597.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3744011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37380NANA7+22402345..22403543expressed protein
LOC_Os07g37390OsAffx.5560.1.S1_at9/117+22408440..22409259hypothetical protein
LOC_Os07g37400Os.8724.1.S1_at11/117+22409532..22411377F-box domain containing protein, expressed
LOC_Os07g37410OsAffx.28340.3.S1_x_at11/117+22413096..22413977hypothetical protein
LOC_Os07g37410OsAffx.28340.1.S1_x_at1/117+22413096..22413977hypothetical protein
LOC_Os07g37420OsAffx.5561.1.S1_s_at11/117+22414480..22415518Short-chain type dehydrogenase/reductase, putative, expressed
LOC_Os07g37430OsAffx.28800.1.S1_x_at8/117+22416251..22417102hypothetical protein
LOC_Os07g37440OsAffx.16597.1.S1_at11/117+22417314..22418394hypothetical protein
LOC_Os07g37454OsAffx.28801.1.S1_s_at11/117+22425967..22427944Organic cation transporter 3, putative, expressed
LOC_Os07g37454Os.55618.1.S2_at11/117+22425967..22427944Organic cation transporter 3, putative, expressed
LOC_Os07g37454Os.55618.1.S1_at11/117+22425967..22427944Organic cation transporter 3, putative, expressed
LOC_Os07g37470Os.47463.1.S1_x_at3/117+22433886..22439389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g37470Os.14491.2.S1_x_at2/117+22433886..22439389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g37480Os.56255.1.S1_x_at11/117+22440418..22442682expressed protein
LOC_Os07g37480Os.56255.1.S1_at10/117+22440418..22442682expressed protein
LOC_Os07g37480OsAffx.23361.2.S1_x_at1/117+22440418..22442682expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16597.1.S1_at--216--571Chr07:22418340..22418364 (25 bp)
ATCCTGAAGCGGACTCATTATCTGC
LOC_Os07g37440
OsAffx.16597.1.S1_at--195--3591Chr07:22418325..22418349 (25 bp)
CATTATCTGCTTGACTTCTTCTGGG
LOC_Os07g37440
OsAffx.16597.1.S1_at--782--9311Chr07:22418277..22418301 (25 bp)
TCCCTGCGGATTTCTCTTGGAAAGT
LOC_Os07g37440
OsAffx.16597.1.S1_at--757--8211Chr07:22418244..22418268 (25 bp)
GGAATACGATTGTCTGGAGTCTGGA
LOC_Os07g37440
OsAffx.16597.1.S1_at--913--971Chr07:22417513..22417537 (25 bp)
AGGAGAGGGCATCATACCTGCACCT
LOC_Os07g37440
OsAffx.16597.1.S1_at--943--3531Chr07:22417501..22417525 (25 bp)
CATACCTGCACCTGTTAGGACTTAG
LOC_Os07g37440
OsAffx.16597.1.S1_at--758--10171Chr07:22417463..22417487 (25 bp)
TATAGCATCTCAGCTGTGCGAGCCA
LOC_Os07g37440
OsAffx.16597.1.S1_at--629--7291Chr07:22417448..22417472 (25 bp)
GTGCGAGCCACCGTAGATAGGGAAA
LOC_Os07g37440
OsAffx.16597.1.S1_at--853--5551Chr07:22417427..22417451 (25 bp)
GAAAGAACTGTGGTACCTTCCGCTC
LOC_Os07g37440
OsAffx.16597.1.S1_at--1043--9271Chr07:22417409..22417433 (25 bp)
TCCGCTCGACTTTGGAGGAGTAGGA
LOC_Os07g37440
OsAffx.16597.1.S1_at--949--4591Chr07:22417361..22417385 (25 bp)
GCGAGCCTTGTTAACGGTAGCGCTT
LOC_Os07g37440
Target Sequence 
ATCCTGAAGCGGACTCATTATCTGCTTGACTTCTTCTGGGGCTCCTTCGATCGCCTTGTAGCTTCCCTGCGGATTTCTCT
TGGAAAGTTGGAACTTGGAATACGATTGTCTGGAGTCTGGACTGGGTGTAGCGAGGATAACATTAGAGAGATGGCCAAAG
CAGTGGAAAACCAACGGTGGACAACAGACATAGGTAGGCGACAAGGAAACAGAGCAACAAAAATGGAAAAAGACGATGGG
GAGACGTTAGAGGAGAGGGCATCATACCTGCACCTGTTAGGACTTAGGAGACATGGACAATATAGCATCTCAGCTGTGCG
AGCCACCGTAGATAGGGAAAGAACTGTGGTACCTTCCGCTCGACTTTGGAGGAGTAGGAAGGGTGGGGGAGGAAGTGGTA
TGGCGAGCCTTGTTAACGGTAGCGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis