Browse Element(s) Details


OsAffx.28800.1.S1_x_at

Description tigr:9633.m01121
TID=OsAffx.28800.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1256011/11hypothetical protein
LOC_Os07g374308/11hypothetical protein
LOC_Os03g500504/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12500NANA5+7163380..7163658hypothetical protein
LOC_Os05g12510OsAffx.26857.1.S1_at11/115+7172070..7174357hypothetical protein
LOC_Os05g12524NANA5+7176206..7176920NA
LOC_Os05g12540OsAffx.26858.1.S1_at11/115+7178367..7178738hypothetical protein
LOC_Os05g12540OsAffx.17095.1.S1_at1/115+7178367..7178738hypothetical protein
LOC_Os05g12550OsAffx.4315.1.S1_at11/115+7179441..7182024expressed protein
LOC_Os05g12550Os.53111.1.S1_at1/115+7179441..7182024expressed protein
LOC_Os05g12560OsAffx.28800.1.S1_x_at11/115+7186965..7189124hypothetical protein
LOC_Os05g12570OsAffx.26859.1.S1_at11/115+7191042..7196018NB-ARC domain containing protein, expressed
LOC_Os05g12580Os.11520.1.S1_at1/115+7198872..7199210hypothetical protein
LOC_Os05g12590OsAffx.14663.1.S1_at11/115+7207573..7207959hypothetical protein
LOC_Os05g12590OsAffx.13464.1.S1_at3/115+7207573..7207959hypothetical protein
LOC_Os05g12600OsAffx.14664.1.S1_at11/115+7211239..7212524hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28800.1.S1_x_at--497--471Chr05:7188488..7188512 (25 bp)
ATCTGCGCCGCCGTGCCGGAAGATG
LOC_Os05g12560
OsAffx.28800.1.S1_x_at--889--5353Chr07:7284932..7284965 (25 bp)
GAAGATGAGGAAGACGACAGCGACA
NONE
OsAffx.28800.1.S1_x_at--368--1453Chr07:22416358..22416382 (25 bp)
AGAAGCTCTACGCCAACACGCGGTA
LOC_Os07g37430
OsAffx.28800.1.S1_x_at--193--9933Chr07:22416413..22416437 (25 bp)
TACGTGGAGCGCAGCTTCCTGGTGG
LOC_Os07g37430
OsAffx.28800.1.S1_x_at--571--1653Chr07:22416420..22416444 (25 bp)
AGCGCAGCTTCCTGGTGGAGTCCCC
LOC_Os07g37430
OsAffx.28800.1.S1_x_at--347--7512Chr07:22416434..22416458 (25 bp)
GTGGAGTCCCCACCAGGCTCTCCAC
LOC_Os07g37430
OsAffx.28800.1.S1_x_at--939--8338Chr10:10667770..10667794 (25 bp)
GGCTGATGCAGGTGGAGCTGCTCCG
NONE
OsAffx.28800.1.S1_x_at--161--8892Chr07:22416657..22416681 (25 bp)
TGAGGCTGAGCACCATGTACTTCGC
LOC_Os07g37430
OsAffx.28800.1.S1_x_at--733--8332Chr07:22416660..22416684 (25 bp)
GGCTGAGCACCATGTACTTCGCCGT
LOC_Os07g37430
OsAffx.28800.1.S1_x_at--672--8912Chr07:22416663..22416687 (25 bp)
TGAGCACCATGTACTTCGCCGTCGA
LOC_Os07g37430
OsAffx.28800.1.S1_x_at--191--5071Chr05:7187969..7187993 (25 bp)
GCAGCGGGCAGCTACGTGTCGCCCA
LOC_Os05g12560
Target Sequence 
ATCTGCGCCGCCGTGCCGGAAGATGAGGAAGACGACAGCGACANGGNTGACAGGAAGGAGGANGCCGTGGAGCTCGNAGA
TGCTGCGCATCGACNGCNCGTGGAAGTCCGTGAAGCCNACGAGCATCCCCGCCGTGTGCGTCCACCGCNAGAAGCTCTAC
GCCAACACGCGGTANGGGATGGTGTANGCGTTCNCCGAGCTGCNTACGTGGAGCGCAGCTTCCTGGTGGAGTCCCCACCA
GGCTCTCCACCGNGCACCGGCGACCGCCNCGGGCTGATGCAGGTGGAGCTGCTCCGNCCCGTGGCCGCAGCTGAGGAGGA
GGGGTTCAAGGTGCGCNTGCTGGACNAGTGCGGCGAGACGTGGGAGGAGGCNGACGACATCGGCGACGTGGNGGTGGTCG
TGGACGCGTCNGGTGCGGGGGCGGCATCNACGNGGGAGTGCCCCAGGNTGAGGCTGAGCACCATGTACTTCGCCGTCGAC
CCCNCNGGCNAGACGCGNGNNNNNACNNNNANNNNNGCCGCAGCGGGCAGCTACGTGTCGCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28800.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis