Browse Element(s) Details


OsAffx.13464.1.S1_at

Description tigr:9631.m05089
TID=OsAffx.13464.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g125903/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12560OsAffx.28800.1.S1_x_at11/115+7186965..7189124hypothetical protein
LOC_Os05g12570OsAffx.26859.1.S1_at11/115+7191042..7196018NB-ARC domain containing protein, expressed
LOC_Os05g12580Os.11520.1.S1_at1/115+7198872..7199210hypothetical protein
LOC_Os05g12590OsAffx.14663.1.S1_at11/115+7207573..7207959hypothetical protein
LOC_Os05g12590OsAffx.13464.1.S1_at3/115+7207573..7207959hypothetical protein
LOC_Os05g12600OsAffx.14664.1.S1_at11/115+7211239..7212524hypothetical protein
LOC_Os05g12610NANA5+7218180..7219734retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.2.S1_x_at9/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.3.S1_at2/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.1.S1_at1/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12620OsAffx.11392.4.S1_s_at1/115+7222116..7226145retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12630Os.17916.1.S1_at11/115+7229295..7230696expressed protein
LOC_Os05g12630Os.28427.2.S1_x_at1/115+7229295..7230696expressed protein
LOC_Os05g12630OsAffx.26865.1.S1_x_at1/115+7229295..7230696expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13464.1.S1_at--255--2372Chr03:29817987..29818011 (25 bp)
AAACCCAATCCGGTGCCTGCAGAGG
NONE
OsAffx.13464.1.S1_at--582--2611Chr03:29817988..29818012 (25 bp)
AACCCAATCCGGTGCCTGCAGAGGC
NONE
OsAffx.13464.1.S1_at--396--1316Chr07:8338037..8338078 (25 bp)
AGAGGCCGACAAGAGTGATCTCGAC
NONE
OsAffx.13464.1.S1_at--1120--6216Chr07:8338038..8338079 (25 bp)
GAGGCCGACAAGAGTGATCTCGACG
NONE
OsAffx.13464.1.S1_at--664--897Chr07:8338039..8338080 (25 bp)
AGGCCGACAAGAGTGATCTCGACGA
NONE
OsAffx.13464.1.S1_at--862--4519Chr07:8338041..8338082 (25 bp)
GCCGACAAGAGTGATCTCGACGAGT
NONE
OsAffx.13464.1.S1_at--788--42111Chr12:21555273..21555312 (24 bp)
CCGACAAGAGTGATCTCGACGAGTT
NONE
OsAffx.13464.1.S1_at--1091--5772Chr12:16735239..16735262 (24 bp)
GACGAGTTCATATTCGACGAGGAAT
NONE
OsAffx.13464.1.S1_at--947--4051Chr03:29818031..29818055 (25 bp)
CGAGTTCATATTCGACGAGGAATAC
NONE
OsAffx.13464.1.S1_at--303--9951Chr03:29818039..29818063 (25 bp)
TATTCGACGAGGAATACTACCCCGT
NONE
OsAffx.13464.1.S1_at--405--9351Chr03:29818042..29818066 (25 bp)
TCGACGAGGAATACTACCCCGTCGT
NONE
Target Sequence 
AAACCCAATCCGGTGCCTGCAGAGGCCGACAAGAGTGATCTCGACGAGTTCATATTCGACGAGGAATACTACCCCGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13464.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis