Browse Element(s) Details


OsAffx.11392.1.S1_at

Description gb:NM_193652.1
DB_XREF= gi:34914387
GEN=B1168H06.14
TID=OsAffx.11392.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1168H06.14 (B1168H06.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3358011/11hypothetical protein
LOC_Os06g319901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g321401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g126201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g297001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g171401/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33530OsAffx.11302.2.S1_at11/111+18782769..18785003hypothetical protein
LOC_Os01g33530OsAffx.11302.2.S1_s_at11/111+18782769..18785003hypothetical protein
LOC_Os01g33530OsAffx.11302.1.S1_at1/111+18782769..18785003hypothetical protein
LOC_Os01g33540Os.25513.1.S1_at11/111+18786069..18789030transposon protein, putative, unclassified, expressed
LOC_Os01g33550OsAffx.23492.1.S1_at11/111+18791153..18791679hypothetical protein
LOC_Os01g33560NANA1+18798783..18799568hypothetical protein
LOC_Os01g33569OsAffx.10792.1.S1_at1/111+18802187..18802483NA
LOC_Os01g33580OsAffx.11392.1.S1_at11/111+18808964..18810421hypothetical protein
LOC_Os01g33580OsAffx.11392.4.S1_s_at11/111+18808964..18810421hypothetical protein
LOC_Os01g33580OsAffx.11392.2.S1_x_at3/111+18808964..18810421hypothetical protein
LOC_Os01g33590Os.46314.3.S1_at2/111+18812074..18815124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33590OsAffx.265.1.S1_at1/111+18812074..18815124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33590OsAffx.7362.1.S1_x_at1/111+18812074..18815124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33609OsAffx.24844.1.S1_at1/111+18823603..18827261transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33609OsAffx.23366.2.S1_s_at1/111+18823603..18827261transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33630Os.47463.1.S1_x_at6/111+18833366..18838199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33630Os.14491.2.S1_x_at4/111+18833366..18838199transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11392.1.S1_at--551--431Chr01:18809839..18809863 (25 bp)
ATCTCATTGGATGTAATTTGGTTCG
LOC_Os01g33580
OsAffx.11392.1.S1_at--41--6271Chr01:18809848..18809872 (25 bp)
GATGTAATTTGGTTCGTGCTCTCTA
LOC_Os01g33580
OsAffx.11392.1.S1_at--688--3851Chr01:18809881..18809905 (25 bp)
CTGTTGGTGCCAATGTTATGTCCGC
LOC_Os01g33580
OsAffx.11392.1.S1_at--186--6631Chr01:18809883..18809907 (25 bp)
GTTGGTGCCAATGTTATGTCCGCAA
LOC_Os01g33580
OsAffx.11392.1.S1_at--569--7791Chr01:18809886..18809910 (25 bp)
GGTGCCAATGTTATGTCCGCAACCT
LOC_Os01g33580
OsAffx.11392.1.S1_at--1145--751Chr01:18809898..18809922 (25 bp)
ATGTCCGCAACCTTTCCATTTGATT
LOC_Os01g33580
OsAffx.11392.1.S1_at--474--9291Chr01:18809901..18809925 (25 bp)
TCCGCAACCTTTCCATTTGATTGCT
LOC_Os01g33580
OsAffx.11392.1.S1_at--372--5151Chr01:18809904..18809928 (25 bp)
GCAACCTTTCCATTTGATTGCTTAG
LOC_Os01g33580
OsAffx.11392.1.S1_at--118--6591Chr01:18809919..18809943 (25 bp)
GATTGCTTAGGGTATAGACCGTTAG
LOC_Os01g33580
OsAffx.11392.1.S1_at--966--9991Chr01:18809931..18809955 (25 bp)
TATAGACCGTTAGAACCAACCGTCA
LOC_Os01g33580
OsAffx.11392.1.S1_at--601--3296Chr05:7223124..7223144 (21 bp)
CACAAACTCTACTACCGAAGGCCAT
LOC_Os05g12620
Target Sequence 
ATCTCATTGGATGTAATTTGGTTCGTGCTCTCTATTATCCCTCTGTTGGTGCCAATGTTATGTCCGCAACCTTTCCATTT
GATTGCTTAGGGTATAGACCGTTAGAACCAACCGTCAAAACCGTTCGAATTTCCACAAACTCTACTACCGAAGGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11392.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis