Browse Element(s) Details


OsAffx.11392.4.S1_s_at

Description tigr:9629.m03147
TID=OsAffx.11392.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3358011/11hypothetical protein
LOC_Os05g126201/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33530OsAffx.11302.2.S1_at11/111+18782769..18785003hypothetical protein
LOC_Os01g33530OsAffx.11302.2.S1_s_at11/111+18782769..18785003hypothetical protein
LOC_Os01g33530OsAffx.11302.1.S1_at1/111+18782769..18785003hypothetical protein
LOC_Os01g33540Os.25513.1.S1_at11/111+18786069..18789030transposon protein, putative, unclassified, expressed
LOC_Os01g33550OsAffx.23492.1.S1_at11/111+18791153..18791679hypothetical protein
LOC_Os01g33560NANA1+18798783..18799568hypothetical protein
LOC_Os01g33569OsAffx.10792.1.S1_at1/111+18802187..18802483NA
LOC_Os01g33580OsAffx.11392.1.S1_at11/111+18808964..18810421hypothetical protein
LOC_Os01g33580OsAffx.11392.4.S1_s_at11/111+18808964..18810421hypothetical protein
LOC_Os01g33580OsAffx.11392.2.S1_x_at3/111+18808964..18810421hypothetical protein
LOC_Os01g33590Os.46314.3.S1_at2/111+18812074..18815124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33590OsAffx.265.1.S1_at1/111+18812074..18815124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33590OsAffx.7362.1.S1_x_at1/111+18812074..18815124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33609OsAffx.24844.1.S1_at1/111+18823603..18827261transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33609OsAffx.23366.2.S1_s_at1/111+18823603..18827261transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33630Os.47463.1.S1_x_at6/111+18833366..18838199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33630Os.14491.2.S1_x_at4/111+18833366..18838199transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11392.4.S1_s_at--1119--71Chr01:18809615..18809639 (25 bp)
ATTCGAATTCGAGGAGAATCTTTTC
LOC_Os01g33580
OsAffx.11392.4.S1_s_at--617--9691Chr01:18809638..18809662 (25 bp)
TCAAATTTTGTTGGAACACCTCAAA
LOC_Os01g33580
OsAffx.11392.4.S1_s_at--1112--7072Chr01:18809694..18809718 (25 bp)
GTCAATTCTGATGAACCTCTCGATA
LOC_Os01g33580
OsAffx.11392.4.S1_s_at--318--9711Chr01:18809826..18809850 (25 bp)
TCAACCGTTACGTATCTCATTGGAT
LOC_Os01g33580
OsAffx.11392.4.S1_s_at--477--5532Chr05:7223256..7223277 (22 bp)
GAAACTCTTAGATATGCCCGAAACT
LOC_Os05g12620
OsAffx.11392.4.S1_s_at--34--1271Chr01:18810103..18810127 (25 bp)
AGATATGCCCGAAACTAGTGTCCTC
LOC_Os01g33580
OsAffx.11392.4.S1_s_at--579--2531Chr01:18810115..18810139 (25 bp)
AACTAGTGTCCTCGACCTGAAAGTA
LOC_Os01g33580
OsAffx.11392.4.S1_s_at--135--11Chr01:18810139..18810163 (25 bp)
AGGAAGAAACGGCACCTTTGTCTCT
LOC_Os01g33580
OsAffx.11392.4.S1_s_at--342--3691Chr01:18810154..18810178 (25 bp)
CTTTGTCTCTGTGTTGCAATCAACC
LOC_Os01g33580
OsAffx.11392.4.S1_s_at--847--3571Chr01:18810240..18810264 (25 bp)
CATTTGAGCCCCTAGACTCTAATCT
LOC_Os01g33580
OsAffx.11392.4.S1_s_at--997--5831Chr01:18810245..18810269 (25 bp)
GAGCCCCTAGACTCTAATCTCGATG
LOC_Os01g33580
Target Sequence 
ATTCGAATTCGAGGAGAATCTTTTCAAATTTTGTTGGAACACCTCAAATTATTCCTGCGAGAAGAGACCACCGACCAAGG
TCAATTCTGATGAACCTCTCGATAAAGCTATGCTTAAAGAGACGGTGAAGAAGTTGACCACCATCATGAGTAACAAATGG
TTGAGGGAAGGAGAGCTCTCATCTGAAGCAACTCAGATCCGTTGCCCCTCCTCAACCGTTACGTATCTCATTGGATGCCA
TCCCATAGAGAAACTCTTAGATATGCCCGAAACTAGTGTCCTCGACCTGAAAGTAGGAAGAAACGGCACCTTTGTCTCTG
TGTTGCAATCAACCAATTCTTTGACAGAGCCTCTTCCTATTCCCAAGTCAATTGAGGAAGTGATGGCCATTTCTCCATTT
GAGCCCCTAGACTCTAATCTCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11392.4.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis