Browse Element(s) Details


OsAffx.23366.2.S1_s_at

Description tigr:9629.m02332
TID=OsAffx.23366.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2415011/11expressed protein
LOC_Os01g197102/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g097501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g159501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g416701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g166301/11hypothetical protein
LOC_Os04g036101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g053301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g490401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g303901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g127701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g017501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g177301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g209801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g242901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g145501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g144101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g106701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g237601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g458101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g217201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g250201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g395701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g280501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g336091/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g286001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g163401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g132501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g307401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g087901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g296301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g246901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g251701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g462801/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24100Os.20602.2.S1_x_at11/111+13573702..13575876hAT family dimerisation domain containing protein
LOC_Os01g24110OsAffx.10638.2.S1_at11/111+13577382..13577867hypothetical protein
LOC_Os01g24120OsAffx.11183.1.S1_at10/111+13578243..13581067hypothetical protein
LOC_Os01g24120OsAffx.10638.1.S1_at7/111+13578243..13581067hypothetical protein
LOC_Os01g24130OsAffx.10637.4.S1_s_at1/111+13584037..13586912transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24130OsAffx.10637.3.S1_s_at1/111+13584037..13586912transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24130OsAffx.10637.1.S1_s_at1/111+13584037..13586912transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24140OsAffx.7362.1.S1_x_at1/111+13594911..13597509transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24150OsAffx.23366.2.S1_s_at11/111+13599989..13600625expressed protein
LOC_Os01g24150OsAffx.23366.1.S1_at1/111+13599989..13600625expressed protein
LOC_Os01g24150OsAffx.31009.1.S1_at1/111+13599989..13600625expressed protein
LOC_Os01g24160NANA1+13603818..13604184hypothetical protein
LOC_Os01g24170NANA1+13606853..13607248hypothetical protein
LOC_Os01g24180Os.24831.3.S1_s_at10/111+13608887..13612909retrotransposon protein, putative, unclassified
LOC_Os01g24180Os.24831.1.S1_x_at4/111+13608887..13612909retrotransposon protein, putative, unclassified
LOC_Os01g24180Os.24831.3.S1_x_at4/111+13608887..13612909retrotransposon protein, putative, unclassified
LOC_Os01g24180Os.24831.4.S1_x_at1/111+13608887..13612909retrotransposon protein, putative, unclassified
LOC_Os01g24190NANA1+13613332..13615403transposon protein, putative, unclassified
LOC_Os01g24200NANA1+13617731..13619699hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23366.2.S1_s_at--39--6191Chr01:13600031..13600055 (25 bp)
GAGGAAGAGCCGTCCCTTCCTATTG
LOC_Os01g24150
OsAffx.23366.2.S1_s_at--1094--1371Chr01:13600036..13600060 (25 bp)
AGAGCCGTCCCTTCCTATTGTGGTT
LOC_Os01g24150
OsAffx.23366.2.S1_s_at--398--4211Chr01:13600040..13600064 (25 bp)
CCGTCCCTTCCTATTGTGGTTGCTC
LOC_Os01g24150
OsAffx.23366.2.S1_s_at--191--8191Chr01:13600066..13600090 (25 bp)
GGAACCAACGGTCCAGCCGACAGAT
LOC_Os01g24150
OsAffx.23366.2.S1_s_at--811--2571Chr01:13600072..13600096 (25 bp)
AACGGTCCAGCCGACAGATAGTTCC
LOC_Os01g24150
OsAffx.23366.2.S1_s_at--277--7771Chr01:13600075..13600099 (25 bp)
GGTCCAGCCGACAGATAGTTCCGAC
LOC_Os01g24150
OsAffx.23366.2.S1_s_at--736--9211Chr01:13600077..13600101 (25 bp)
TCCAGCCGACAGATAGTTCCGACAG
LOC_Os01g24150
OsAffx.23366.2.S1_s_at--80--3391Chr01:13600079..13600103 (25 bp)
CAGCCGACAGATAGTTCCGACAGCG
LOC_Os01g24150
OsAffx.23366.2.S1_s_at--276--4231Chr01:13600082..13600106 (25 bp)
CCGACAGATAGTTCCGACAGCGACA
LOC_Os01g24150
OsAffx.23366.2.S1_s_at--720--3432Chr01:13600086..13600110 (25 bp)
CAGATAGTTCCGACAGCGACATAGC
LOC_Os01g24150
OsAffx.23366.2.S1_s_at--174--107336Chr12:14356238..14356258 (21 bp)
TTGTCCAAGCCCGAAGAGAAGGAAA
LOC_Os12g25020
Target Sequence 
GAGGAAGAGCCGTCCCTTCCTATTGTGGTTGCTCCGGAACCAACGGTCCAGCCGACAGATAGTTCCGACAGCGACATAGC
TGACGAGGATGATGAGTACTCGTCGCCAAGTGATCCTTGTCCAAGCCCGAAGAGAAGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23366.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis