Browse Element(s) Details


OsAffx.10638.2.S1_at

Description tigr:9629.m02328
TID=OsAffx.10638.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2411011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g24070Os.21239.1.S1_at6/111+13553141..13555606GATA zinc finger family protein, expressed
LOC_Os01g24080OsAffx.11182.1.S1_at11/111+13560432..13563690expressed protein
LOC_Os01g24090Os.53326.1.S1_at11/111+13564517..13567396expressed protein
LOC_Os01g24100Os.20602.2.S1_x_at11/111+13573702..13575876hAT family dimerisation domain containing protein
LOC_Os01g24110OsAffx.10638.2.S1_at11/111+13577382..13577867hypothetical protein
LOC_Os01g24120OsAffx.11183.1.S1_at10/111+13578243..13581067hypothetical protein
LOC_Os01g24120OsAffx.10638.1.S1_at7/111+13578243..13581067hypothetical protein
LOC_Os01g24130OsAffx.10637.4.S1_s_at1/111+13584037..13586912transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24130OsAffx.10637.3.S1_s_at1/111+13584037..13586912transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24130OsAffx.10637.1.S1_s_at1/111+13584037..13586912transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24140OsAffx.7362.1.S1_x_at1/111+13594911..13597509transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g24150OsAffx.23366.2.S1_s_at11/111+13599989..13600625expressed protein
LOC_Os01g24150OsAffx.23366.1.S1_at1/111+13599989..13600625expressed protein
LOC_Os01g24150OsAffx.31009.1.S1_at1/111+13599989..13600625expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10638.2.S1_at--780--891Chr01:13577802..13577826 (25 bp)
AGGCGACGACGATATAGTGCAACTT
LOC_Os01g24110
OsAffx.10638.2.S1_at--1125--9011Chr01:13577785..13577809 (25 bp)
TGCAACTTTTGCAGCTTGAAGCGAC
LOC_Os01g24110
OsAffx.10638.2.S1_at--522--6051Chr01:13577734..13577758 (25 bp)
GAGTTACCTCATCGAAGGGCTCCGC
LOC_Os01g24110
OsAffx.10638.2.S1_at--268--831Chr01:13577705..13577729 (25 bp)
ATGGTTGCGCCACCACTGCCTAGGG
LOC_Os01g24110
OsAffx.10638.2.S1_at--143--4111Chr01:13577649..13577673 (25 bp)
CGAAACAGACGATTTGAGGGCGATA
LOC_Os01g24110
OsAffx.10638.2.S1_at--72--7671Chr01:13577623..13577647 (25 bp)
GGGATATATGCCATCTAATTCGTAG
LOC_Os01g24110
OsAffx.10638.2.S1_at--855--71Chr01:13577606..13577630 (25 bp)
ATTCGTAGACCTTTCAGGGCAAGCC
LOC_Os01g24110
OsAffx.10638.2.S1_at--527--1071Chr01:13577591..13577615 (25 bp)
AGGGCAAGCCACTCAATACGCACTT
LOC_Os01g24110
OsAffx.10638.2.S1_at--946--9931Chr01:13577575..13577599 (25 bp)
TACGCACTTCTTTCAGATTTTGCAC
LOC_Os01g24110
OsAffx.10638.2.S1_at--418--10273Chr03:1085034..1085059 (25 bp)
TTTGCACTGAGATAGCGAATTCCTT
NONE
OsAffx.10638.2.S1_at--131--9995Chr07:26998978..26999002 (25 bp)
TAGCGAATTCCTTTATTCCGTGCCA
NONE
Target Sequence 
AGGCGACGACGATATAGTGCAACTTTTGCAGCTTGAAGCGACAGGGGAGACTGGACTGGGACTCTGGGGAGTTACCTCAT
CGAAGGGCTCCGCCTCCATGGTTGCGCCACCACTGCCTAGGGTTCTCCCCTCCAAATCGACGGCAGGAGTGAACGAAACA
GACGATTTGAGGGCGATAGGGGATATATGCCATCTAATTCGTAGACCTTTCAGGGCAAGCCACTCAATACGCACTTCTTT
CAGATTTTGCACTGAGATAGCGAATTCCTTTATTCCGTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10638.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis