Browse Element(s) Details


OsAffx.23366.1.S1_at

Description gb:NM_183967.1
DB_XREF= gi:34895061
GEN=B1045F02.27
TID=OsAffx.23366.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1045F02.27 (B1045F02.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g607201/11hypothetical protein
LOC_Os01g486501/11expressed protein
LOC_Os04g215201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g144101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g197101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g490401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g132501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g416701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g242901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g209801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g053301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g127001/11hypothetical protein
LOC_Os02g303901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g237601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g163401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g087901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g113701/11hypothetical protein
LOC_Os05g251701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g241501/11expressed protein
LOC_Os04g246901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g106701/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60690OsAffx.23876.1.S1_x_at11/111+35421295..35421801hypothetical protein
LOC_Os01g60700Os.32685.1.S1_at11/111+35423026..35427468Protein kinase domain containing protein, expressed
LOC_Os01g60710NANA1+35438768..35439598hypothetical protein
LOC_Os01g60720OsAffx.11679.2.A1_at10/111+35445719..35446849hypothetical protein
LOC_Os01g60720OsAffx.23366.1.S1_at1/111+35445719..35446849hypothetical protein
LOC_Os01g60730Os.35921.2.S1_x_at11/111+35448474..35449835Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g60730Os.35921.1.S1_at11/111+35448474..35449835Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g60740Os.8827.1.S1_at10/111+35456714..35457762Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os01g60750NANA1+35458392..35462509transposon protein, putative, unclassified
LOC_Os01g60760Os.15920.1.S1_at5/111+35465295..35466382hypothetical protein
LOC_Os01g60760Os.29856.1.S1_x_at1/111+35465295..35466382hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23366.1.S1_at--616--9391Chr01:13599321..13599345 (25 bp)
TCGTCGGCCGTTCATTGTCCACGGA
NONE
OsAffx.23366.1.S1_at--473--8611NONE
TGTCCACGGACAAGTACGAAACGAT
NONE
OsAffx.23366.1.S1_at--450--5611Chr01:13599977..13599998 (22 bp)
GACAAGTACGAAACGATGGCCAATG
NONE
OsAffx.23366.1.S1_at--460--75719Chr11:12940725..12940748 (24 bp)
GGGCGCCACGGCGATCAAAACGGCA
LOC_Os11g23760
OsAffx.23366.1.S1_at--348--5531NONE
GAAAGACGACGAGCCGGTTGTTGCT
NONE
OsAffx.23366.1.S1_at--257--5876Chr06:14030349..14030372 (24 bp)
GAGCCGGTTGTTGCTCTTATTCACC
NONE
OsAffx.23366.1.S1_at--116--9371Chr01:13601161..13601181 (21 bp)
TCGACATGGCGGTCAGAAGGTATGT
NONE
OsAffx.23366.1.S1_at--522--42368Chr12:22988585..22988609 (25 bp)
CCGACTTCAATGCAAATGAACAAAT
NONE
OsAffx.23366.1.S1_at--242--24720Chr12:21600164..21600183 (20 bp)
AACAAATTCATATTCTCAACTACAG
NONE
OsAffx.23366.1.S1_at--948--10191Chr01:13601692..13601716 (25 bp)
TATTCTCAACTACAGACCATGGAGT
NONE
OsAffx.23366.1.S1_at--133--21518Chr12:4790568..4790589 (22 bp)
ACAGACCATGGAGTAACTGTTATCG
NONE
Target Sequence 
TCGTCGGCCGTTCATTGTCCACGGACAAGTACGAAACGATGGCCAATGGTACTAAAGGGACTGAAGAGAAGGGTTTAGGG
GAGGAAGAGCCGTCCCTTCCTATTGTGGTTGCTCCGGAACCAACGGTCCAGCCGACAGATAGTTCCGACAGCGACATAGC
TGACGAGGATGATGAGTACTCGTCGCCAAGTGATCCTTGTCCAAGCCCGAAGAGAAGGAAAAAGGGCGAGGGTGAAAAAG
GCGACAAGGACTACATTCCCCCTAAAGAAGGGGAAAGGGCGCCACGGCGATCAAAACGGCAGCCAAAGAAAAAAGATAAG
TCGAAAGACGACGAGCCGGTTGTTGCTCTTATTCACCATAATCACACCAGTACAATATTTGGGGTAGCCTATCTAACTGT
TGTCGACATGGCGGTCAGAAGGTATGTGGTATCCATAACCCTGACAGTAGCCCCCGACTTCAATGCAAATGAACAAATTC
ATATTCTCAACTACAGACCATGGAGTAACTGTTATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23366.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis