Browse Element(s) Details


Os.35921.2.S1_x_at

Description gb:NM_190371.1
DB_XREF= gi:34907825
GEN=P0485B12.26
TID=Os.35921.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35921 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0485B12.26 (P0485B12.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0485B12.26 (P0485B12.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6073011/11Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g400201/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60700Os.32685.1.S1_at11/111+35423026..35427468Protein kinase domain containing protein, expressed
LOC_Os01g60710NANA1+35438768..35439598hypothetical protein
LOC_Os01g60720OsAffx.11679.2.A1_at10/111+35445719..35446849hypothetical protein
LOC_Os01g60720OsAffx.23366.1.S1_at1/111+35445719..35446849hypothetical protein
LOC_Os01g60730Os.35921.2.S1_x_at11/111+35448474..35449835Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g60730Os.35921.1.S1_at11/111+35448474..35449835Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g60740Os.8827.1.S1_at10/111+35456714..35457762Nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os01g60750NANA1+35458392..35462509transposon protein, putative, unclassified
LOC_Os01g60760Os.15920.1.S1_at5/111+35465295..35466382hypothetical protein
LOC_Os01g60760Os.29856.1.S1_x_at1/111+35465295..35466382hypothetical protein
LOC_Os01g60770Os.4644.1.S1_at11/111+35472366..35474187Alpha-expansin 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35921.2.S1_x_at--419--7651Chr01:35449370..35449394 (25 bp)
GGGAGGCGCAGCACGCACTGAGCAG
LOC_Os01g60730
Os.35921.2.S1_x_at--531--5811Chr01:35449326..35449350 (25 bp)
GACGCCAGCTTCGACACCAACATGG
LOC_Os01g60730
Os.35921.2.S1_x_at--398--1712Chr05:23427147..23427221 (25 bp)
ACCAACATGGTGATCATCCTCGCGG
LOC_Os05g40020
Os.35921.2.S1_x_at--930--2491Chr01:35449308..35449332 (25 bp)
AACATGGTGATCATCCTCGCGGCGC
LOC_Os01g60730
Os.35921.2.S1_x_at--577--811Chr01:35449305..35449329 (25 bp)
ATGGTGATCATCCTCGCGGCGCTGC
LOC_Os01g60730
Os.35921.2.S1_x_at--22--9351Chr01:35449244..35449268 (25 bp)
TCGCGCGGCTCATCATCCGGTGGGC
LOC_Os01g60730
Os.35921.2.S1_x_at--369--2751Chr01:35449152..35449176 (25 bp)
AAGAAGCGCGCGCTCAGGAGCATCC
LOC_Os01g60730
Os.35921.2.S1_x_at--1006--951Chr01:35449137..35449161 (25 bp)
AGGAGCATCCCCATCGAGGTGTACG
LOC_Os01g60730
Os.35921.2.S1_x_at--362--1491Chr01:35449134..35449158 (25 bp)
AGCATCCCCATCGAGGTGTACGGCG
LOC_Os01g60730
Os.35921.2.S1_x_at--429--551Chr01:35449131..35449155 (25 bp)
ATCCCCATCGAGGTGTACGGCGGAG
LOC_Os01g60730
Os.35921.2.S1_x_at--118--4131Chr01:35448993..35449017 (25 bp)
CGCTGCGTCGACACGTGGCTCGTCT
LOC_Os01g60730
Target Sequence 
GGGAGGCGCAGCACGCACTGAGCAGCGGCGGGGGAGGGGGCAGCGACGCCAGCTTCGACACCAACATGGTGATCATCCTC
GCGGCGCTGCTCTTCGCGCTGCTGTTCGCGCTCGGGCTCAACTCGCTCGCGCGGCTCATCATCCGGTGGGCGCGGCGGGC
GGCGACGGGGGAAGGCGCCGGCGGCGGCGTGGAGGGGGCGGGCGCCGGCGGCGGGCTCAAGAAGCGCGCGCTCAGGAGCA
TCCCCATCGAGGTGTACGGCGGAGGTGGTGGAGGGAGCCCCGCCGCCGCGGCGGAGGTCTGCGCCATCTGCCTCGGCGAG
TTCGCGGACGGCGAGAAGGTGCGCGTGCTGCCGCGCTGCGGCCATGGCTTCCACGTCCGCTGCGTCGACACGTGGCTCGT
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35921.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis