Browse Element(s) Details


Os.29856.1.S1_x_at

Description gb:AK109750.1
DB_XREF= gi:32994959
TID=Os.29856.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29856 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1125_C04.1 (OJ1125_C04.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-F07, full insert sequence.
FL= gb:AK109750.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g713601/11hypothetical protein
LOC_Os01g607601/11hypothetical protein
LOC_Os03g221901/11expressed protein
LOC_Os07g286401/11hypothetical protein
LOC_Os03g474601/11Ribosome inactivating protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71330Os.53046.1.S1_at11/111+41670176..41671113expressed protein
LOC_Os01g71330Os.53046.1.S1_s_at11/111+41670176..41671113expressed protein
LOC_Os01g71340Os.2416.1.S1_a_at11/111+41673497..41675222Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative, expressed
LOC_Os01g71350Os.32115.1.S1_at11/111+41676580..41677967Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71360OsAffx.6133.2.A1_at1/111+41678004..41679287hypothetical protein
LOC_Os01g71360Os.29856.1.S1_x_at1/111+41678004..41679287hypothetical protein
LOC_Os01g71370OsAffx.29536.5.S1_x_at11/111+41689753..41690703hypothetical protein
LOC_Os01g71380Os.1385.2.S1_x_at11/111+41692029..41693214Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71390OsAffx.16205.1.S1_at2/111+41694593..41695873hypothetical protein
LOC_Os01g71400OsAffx.24006.1.S1_at11/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400Os.2416.1.S1_a_at2/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400OsAffx.21878.1.S1_x_at2/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400OsAffx.21878.2.S1_x_at1/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71410OsAffx.21887.1.S1_s_at11/111+41702021..41703146Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71410Os.1385.2.S1_x_at1/111+41702021..41703146Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29856.1.S1_x_at--750--4391Chr01:27818142..27818166 (25 bp)
GCCAACCGGCCTACAGGCACAGAGA
NONE
Os.29856.1.S1_x_at--249--3931Chr01:27818136..27818160 (25 bp)
CGGCCTACAGGCACAGAGAGAGAGA
NONE
Os.29856.1.S1_x_at--890--1331Chr01:27818084..27818108 (25 bp)
AGAGGGAGAGTGACTTAGCCTGACA
NONE
Os.29856.1.S1_x_at--481--1071Chr01:27818082..27818106 (25 bp)
AGGGAGAGTGACTTAGCCTGACATG
NONE
Os.29856.1.S1_x_at--639--1691Chr01:27817996..27818020 (25 bp)
ACCACTTAAGGTTCTATTGTGACCG
NONE
Os.29856.1.S1_x_at--1082--2051Chr01:27817994..27818018 (25 bp)
CACTTAAGGTTCTATTGTGACCGGT
NONE
Os.29856.1.S1_x_at--89--9771Chr01:27817990..27818014 (25 bp)
TAAGGTTCTATTGTGACCGGTTTTG
NONE
Os.29856.1.S1_x_at--1016--78944Chr12:3058221..3058241 (21 bp)
GGTTCTATTGTGACCGGTTTTGATT
NONE
Os.29856.1.S1_x_at--173--9731Chr01:27817963..27817987 (25 bp)
TAATTAAGGGATGCCGGATATCTGG
NONE
Os.29856.1.S1_x_at--1046--2877Chr09:17578045..17578067 (23 bp)
AAGGGATGCCGGATATCTGGTTTGC
NONE
Os.29856.1.S1_x_at--437--5911Chr09:17578050..17578075 (25 bp)
ATGCCGGATATCTGGTTTGCGGTTT
NONE
Target Sequence 
GCCAACCGGCCTACAGGCACAGAGAGAGAGAGAAAGAGGAGTAACTGAGGAAGAGAAGAGAGGGAGAGTGACTTAGCCTG
ACATGTGGGGCCCACGTGGGGTCCCATGCTGACTCAGCCGCCACGTAGGATAAAACCGGGGTTAAAACCACTTAAGGTTC
TATTGTGACCGGTTTTGATTAATTAAGGGATGCCGGATATCTGGTTTGCGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29856.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis