Browse Element(s) Details


OsAffx.6133.2.A1_at

Description tigr:9630.m00990
TID=OsAffx.6133.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g713601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71330Os.53046.1.S1_at11/111+41670176..41671113expressed protein
LOC_Os01g71330Os.53046.1.S1_s_at11/111+41670176..41671113expressed protein
LOC_Os01g71340Os.2416.1.S1_a_at11/111+41673497..41675222Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative, expressed
LOC_Os01g71350Os.32115.1.S1_at11/111+41676580..41677967Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71360OsAffx.6133.2.A1_at1/111+41678004..41679287hypothetical protein
LOC_Os01g71360Os.29856.1.S1_x_at1/111+41678004..41679287hypothetical protein
LOC_Os01g71370OsAffx.29536.5.S1_x_at11/111+41689753..41690703hypothetical protein
LOC_Os01g71380Os.1385.2.S1_x_at11/111+41692029..41693214Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71390OsAffx.16205.1.S1_at2/111+41694593..41695873hypothetical protein
LOC_Os01g71400OsAffx.24006.1.S1_at11/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400Os.2416.1.S1_a_at2/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400OsAffx.21878.1.S1_x_at2/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71400OsAffx.21878.2.S1_x_at1/111+41697564..41698743Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71410OsAffx.21887.1.S1_s_at11/111+41702021..41703146Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71410Os.1385.2.S1_x_at1/111+41702021..41703146Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6133.2.A1_at--458--1715Chr04:26539941..26540012 (25 bp)
ACCTTGGATGTACTTTTTCCGCTTG
NONE
OsAffx.6133.2.A1_at--24--8791NONE
TGTTTTAGCCTAGCCAATCTCAGCA
NONE
OsAffx.6133.2.A1_at--619--6951Chr02:18495838..18495862 (25 bp)
GTAGATGATTGGTACGCCCGTGATG
NONE
OsAffx.6133.2.A1_at--1116--4531Chr02:18495853..18495877 (25 bp)
GCCCGTGATGGGATCTTTCCAGTAA
NONE
OsAffx.6133.2.A1_at--716--6631Chr02:18495898..18495922 (25 bp)
GTTGTGAAGATCCATCGGGCTCCAA
NONE
OsAffx.6133.2.A1_at--994--3271Chr02:18495951..18495975 (25 bp)
CAAAATTGTATCCTGCTGGGTCTGT
NONE
OsAffx.6133.2.A1_at--302--4731Chr02:18495965..18495989 (25 bp)
GCTGGGTCTGTTGTTGGCAATACTA
NONE
OsAffx.6133.2.A1_at--398--2111Chr02:18496016..18496040 (25 bp)
ACATGCATCATTTGGTGCTCTTCCA
NONE
OsAffx.6133.2.A1_at--446--7311Chr02:18496030..18496054 (25 bp)
GTGCTCTTCCATCAAACAGTAGTGA
NONE
OsAffx.6133.2.A1_at--322--6071Chr02:18496144..18496168 (25 bp)
GAGTTCTTCAATAGTCTTCACATAT
NONE
OsAffx.6133.2.A1_at--811--2631Chr02:18496180..18496204 (25 bp)
AACCTCTGCATTGGCCTTTGTATAG
NONE
Target Sequence 
ACCTTGGATGTACTTTTTCCGCTTGTTTTAGCCTAGCCAATCTCAGCAAGGAGAGAACATCATCTCCGTAGATGATTGGT
ACGCCCGTGATGGGATCTTTCCAGTAAAAGGTCTCAATGAAATAAACGTTGTGAAGATCCATCGGGCTCCAACCAGAGAA
TATCTTGAGACGTTCAAGCACAAAATTGTATCCTGCTGGGTCTGTTGTTGGCAATACTAGCAGTTTATTGTACAATGATG
TAAAGACATGCATCATTTGGTGCTCTTCCATCAAACAGTAGTGATAGCATATCAGATACTGATAAGCAGTTGGATCTCTC
ATAATCATACTTAGCCATCTGTGAATATCTTCAGGAACTGGTAAAGATTCAAAGAGTTCTTCAATAGTCTTCACATATTG
ATAAAAGTCAACCTCTGCATTGGCCTTTGTATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6133.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis