Browse Element(s) Details


OsAffx.21878.1.S1_x_at

Description gb:NM_189745.1
DB_XREF= gi:34906573
GEN=P0660F12.16
TID=OsAffx.21878.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (P0660F12.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g716409/11hypothetical protein
LOC_Os01g714002/11Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71620OsAffx.32010.2.S1_s_at11/111+41819578..41826524hypothetical protein
LOC_Os01g71620OsAffx.32010.3.S1_x_at5/111+41819578..41826524hypothetical protein
LOC_Os01g71620OsAffx.32010.2.S1_x_at4/111+41819578..41826524hypothetical protein
LOC_Os01g71620Os.49334.1.S1_at1/111+41819578..41826524hypothetical protein
LOC_Os01g71630OsAffx.21879.1.S1_at11/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_s_at11/111+41837041..41846521expressed protein
LOC_Os01g71630OsAffx.21879.1.S1_x_at10/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_x_at8/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_at7/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.2.S1_x_at5/111+41837041..41846521expressed protein
LOC_Os01g71640OsAffx.21878.2.S1_x_at11/111+41851360..41852302hypothetical protein
LOC_Os01g71640OsAffx.21878.2.S1_at11/111+41851360..41852302hypothetical protein
LOC_Os01g71640OsAffx.21878.1.S1_x_at9/111+41851360..41852302hypothetical protein
LOC_Os01g71650OsAffx.24006.1.S1_at11/111+41852572..41853264Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71660OsAffx.31070.1.S1_x_at1/111+41854160..41856413transposon protein, putative, unclassified
LOC_Os01g71670Os.1385.1.S1_at10/111+41860123..41862468Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71670Os.1385.2.S1_x_at7/111+41860123..41862468Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71680OsAffx.2458.1.S1_at11/111+41863826..41865169Glucan endo-1,3-beta-glucosidase GII precursor, putative
LOC_Os01g71690Os.42832.1.S1_at10/111+41866607..41872489recA protein, expressed
LOC_Os01g71690Os.25266.1.S1_at7/111+41866607..41872489recA protein, expressed
LOC_Os01g71700OsAffx.11817.1.S1_x_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.1.S1_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.2.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.3.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009627biological_processsystemic acquired resistance
GO:0004338molecular_functionglucan 1,3-beta-glucosidase activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21878.1.S1_x_at--652--2171Chr01:41851390..41851414 (25 bp)
ACACTGGCACTGGTCCTTGGAGTAC
LOC_Os01g71640
OsAffx.21878.1.S1_x_at--435--1951Chr01:41851392..41851416 (25 bp)
ACTGGCACTGGTCCTTGGAGTACTT
LOC_Os01g71640
OsAffx.21878.1.S1_x_at--615--5091Chr01:41851396..41851420 (25 bp)
GCACTGGTCCTTGGAGTACTTGCGG
LOC_Os01g71640
OsAffx.21878.1.S1_x_at--811--8592Chr01:41851400..41851424 (25 bp)
TGGTCCTTGGAGTACTTGCGGTCAC
LOC_Os01g71640
OsAffx.21878.1.S1_x_at--346--12Chr01:41851410..41851433 (24 bp)
AGTACTTGCGGTCACTCCTAAAGGC
LOC_Os01g71640
OsAffx.21878.1.S1_x_at--182--7831NONE
GGTCACTCCTAAAGGCCCGTCGTCG
NONE
OsAffx.21878.1.S1_x_at--522--9231NONE
TCCTAAAGGCCCGTCGTCGATGTCA
NONE
OsAffx.21878.1.S1_x_at--114--9831Chr01:41851948..41851969 (22 bp)
TAAAGGCCCGTCGTCGATGTCACCG
LOC_Os01g71640
OsAffx.21878.1.S1_x_at--1004--8851Chr01:41852065..41852089 (25 bp)
TGATGCCACCGCTGATGTCGCTGCG
LOC_Os01g71640
OsAffx.21878.1.S1_x_at--484--751Chr01:41852100..41852124 (25 bp)
ATGTCGTCGCCGCACTCGCTGATGC
LOC_Os01g71640
OsAffx.21878.1.S1_x_at--224--6351Chr01:41852120..41852144 (25 bp)
GATGCCGCCGCCGATGCAGCCACGA
LOC_Os01g71640
Target Sequence 
ACACTGGCACTGGTCCTTGGAGTACTTGCGGTCACTCCTAAAGGCCCGTCGTCGATGTCACCGCCACCACCGTCGTCATC
GCTGCCTTGCCCGAGGCCCGCCACCGCCGTCCCCACGGTCGCCACCGCCGCACTCGCTGATGCCGCCGCAACGCCCTCTG
ATGCCACCGCTGATGTCGCTGCGGCGCCCGCCGATGTCGTCGCCGCACTCGCTGATGCCGCCGCCGATGCAGCCACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21878.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis