Browse Element(s) Details


OsAffx.32010.3.S1_x_at

Description tigr:9629.m07083
TID=OsAffx.32010.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g716205/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71590Os.6747.1.S1_a_at11/111+41797132..41805170expressed protein
LOC_Os01g71590Os.23761.1.S1_at1/111+41797132..41805170expressed protein
LOC_Os01g71599OsAffx.24004.1.S1_at10/111+41807380..41809240hypothetical protein
LOC_Os01g71608Os.26710.1.S1_at2/111+41812198..41812863hypothetical protein
LOC_Os01g71620OsAffx.32010.2.S1_s_at11/111+41819578..41826524hypothetical protein
LOC_Os01g71620OsAffx.32010.3.S1_x_at5/111+41819578..41826524hypothetical protein
LOC_Os01g71620OsAffx.32010.2.S1_x_at4/111+41819578..41826524hypothetical protein
LOC_Os01g71620Os.49334.1.S1_at1/111+41819578..41826524hypothetical protein
LOC_Os01g71630OsAffx.21879.1.S1_at11/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_s_at11/111+41837041..41846521expressed protein
LOC_Os01g71630OsAffx.21879.1.S1_x_at10/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_x_at8/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_at7/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.2.S1_x_at5/111+41837041..41846521expressed protein
LOC_Os01g71640OsAffx.21878.2.S1_x_at11/111+41851360..41852302hypothetical protein
LOC_Os01g71640OsAffx.21878.2.S1_at11/111+41851360..41852302hypothetical protein
LOC_Os01g71640OsAffx.21878.1.S1_x_at9/111+41851360..41852302hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32010.3.S1_x_at--790--7971Chr01:41820602..41820626 (25 bp)
GGATCCAAGCAACAGTGGCGCACAT
LOC_Os01g71620
OsAffx.32010.3.S1_x_at--467--8391Chr01:41820586..41820610 (25 bp)
GGCGCACATCGCAAGCAGAGGAGAT
LOC_Os01g71620
OsAffx.32010.3.S1_x_at--533--4571Chr01:41820515..41820539 (25 bp)
GCGCGATGGATTTCGGCCACGGCAC
LOC_Os01g71620
OsAffx.32010.3.S1_x_at--821--5611Chr01:41820421..41820511 (25 bp)
GACAACGACGTTCCCAGATGTATAT
LOC_Os01g71620
OsAffx.32010.3.S1_x_at--1132--4971Chr01:41820375..41820399 (25 bp)
GCATGCGGGTTTTCCTCATTATTTA
LOC_Os01g71620
OsAffx.32010.3.S1_x_at--282--6051Chr01:41819302..41819326 (25 bp)
GAGATACACAGACTCGTCCTTCAAT
NONE
OsAffx.32010.3.S1_x_at--829--5711Chr01:41819292..41819316 (25 bp)
GACTCGTCCTTCAATACTGGTTTTG
NONE
OsAffx.32010.3.S1_x_at--164--331Chr01:41819279..41819303 (25 bp)
ATACTGGTTTTGCATGTTCTAGGAT
NONE
OsAffx.32010.3.S1_x_at--973--611Chr01:41818601..41818625 (25 bp)
ATGCTGTAGGGCAAGGTCTTCCTTT
NONE
OsAffx.32010.3.S1_x_at--84--191Chr01:41818298..41818595 (25 bp)
ATTTACTGCTCTTAGTTCGTTGTCA
NONE
OsAffx.32010.3.S1_x_at--275--9831Chr01:41818209..41818233 (25 bp)
TAACAATTTCCCCTCAATGGCAGTG
NONE
Target Sequence 
GGATCCAAGCAACAGTGGCGCACATCGCAAGCAGAGGAGATGTTGGAGCCAGGGTCGAGAGGGACGGCAGGGGCATTGCG
GAGGTCGGCGCGATGGATTTCGGCCACGGCACGGCGACAACGACGTTCCCAGATGTATATGTTGCTGACAAAGGGATAGC
AGCATGCGGGTTTTCCTCATTATTTATGGATTGCTTCAAGATCATGGAAAATGTACTGGAGAAACAAGAGAATTTGTTGG
CATTTGAATTCGAGGTTAGACAGTGGGGTTGTGACAAAAGGTATGACATTAGGGGTGAGGGAGCTTGCTTGAAGAGATAC
ACAGACTCGTCCTTCAATACTGGTTTTGCATGTTCTAGGATGCTAGAGCCAATAACTCAAAGACTTAGTGTTATGAGTTT
TACATGTGGAATTTTCAGCAGATGCTGTAGGGCAAGGTCTTCCTTTAGAAGATTTACTGCTCTTAGTTCGTTGTCAATTA
GTAGGGAAAAATGTGGTTATGATGTTGGAACTACTCACAAAAAGAAAAAAATTGTGACAGTAACAATTTCCCCTCAATGG
CAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32010.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis