Browse Element(s) Details


OsAffx.21878.2.S1_at

Description tigr:9629.m07085
TID=OsAffx.21878.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7164011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71620OsAffx.32010.2.S1_s_at11/111+41819578..41826524hypothetical protein
LOC_Os01g71620OsAffx.32010.3.S1_x_at5/111+41819578..41826524hypothetical protein
LOC_Os01g71620OsAffx.32010.2.S1_x_at4/111+41819578..41826524hypothetical protein
LOC_Os01g71620Os.49334.1.S1_at1/111+41819578..41826524hypothetical protein
LOC_Os01g71630OsAffx.21879.1.S1_at11/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_s_at11/111+41837041..41846521expressed protein
LOC_Os01g71630OsAffx.21879.1.S1_x_at10/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_x_at8/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_at7/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.2.S1_x_at5/111+41837041..41846521expressed protein
LOC_Os01g71640OsAffx.21878.2.S1_x_at11/111+41851360..41852302hypothetical protein
LOC_Os01g71640OsAffx.21878.2.S1_at11/111+41851360..41852302hypothetical protein
LOC_Os01g71640OsAffx.21878.1.S1_x_at9/111+41851360..41852302hypothetical protein
LOC_Os01g71650OsAffx.24006.1.S1_at11/111+41852572..41853264Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71660OsAffx.31070.1.S1_x_at1/111+41854160..41856413transposon protein, putative, unclassified
LOC_Os01g71670Os.1385.1.S1_at10/111+41860123..41862468Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71670Os.1385.2.S1_x_at7/111+41860123..41862468Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71680OsAffx.2458.1.S1_at11/111+41863826..41865169Glucan endo-1,3-beta-glucosidase GII precursor, putative
LOC_Os01g71690Os.42832.1.S1_at10/111+41866607..41872489recA protein, expressed
LOC_Os01g71690Os.25266.1.S1_at7/111+41866607..41872489recA protein, expressed
LOC_Os01g71700OsAffx.11817.1.S1_x_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.1.S1_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.2.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.3.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21878.2.S1_at--186--7831Chr01:41851419..41851724 (25 bp)
GGTCACTCCTAAAGGTGGAATTGAT
LOC_Os01g71640
OsAffx.21878.2.S1_at--574--7071Chr01:41851420..41851725 (25 bp)
GTCACTCCTAAAGGTGGAATTGATT
LOC_Os01g71640
OsAffx.21878.2.S1_at--286--10371Chr01:41851724..41851748 (25 bp)
TTTTTACGTGCGGAGCTTCTACCCG
LOC_Os01g71640
OsAffx.21878.2.S1_at--288--10371Chr01:41851725..41851749 (25 bp)
TTTTACGTGCGGAGCTTCTACCCGT
LOC_Os01g71640
OsAffx.21878.2.S1_at--526--10451Chr01:41851727..41851751 (25 bp)
TTACGTGCGGAGCTTCTACCCGTCT
LOC_Os01g71640
OsAffx.21878.2.S1_at--464--1911Chr01:41851729..41851753 (25 bp)
ACGTGCGGAGCTTCTACCCGTCTGG
LOC_Os01g71640
OsAffx.21878.2.S1_at--1099--7291Chr01:41851731..41851755 (25 bp)
GTGCGGAGCTTCTACCCGTCTGGAA
LOC_Os01g71640
OsAffx.21878.2.S1_at--734--9131Chr01:41851732..41851756 (25 bp)
TGCGGAGCTTCTACCCGTCTGGAAG
LOC_Os01g71640
OsAffx.21878.2.S1_at--556--4671Chr01:41851733..41851756 (24 bp)
GCGGAGCTTCTACCCGTCTGGAAGC
LOC_Os01g71640
OsAffx.21878.2.S1_at--431--1551Chr01:41851737..41851955 (25 bp)
AGCTTCTACCCGTCTGGAAGCCCGT
LOC_Os01g71640
OsAffx.21878.2.S1_at--1113--9931Chr01:41851743..41851961 (25 bp)
TACCCGTCTGGAAGCCCGTCGTCGA
LOC_Os01g71640
Target Sequence 
GGTCACTCCTAAAGGTGGAATTGATTTTTACGTGCGGAGCTTCTACCCGTCTGGAAGCCCGTCGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21878.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis