Browse Element(s) Details


Os.49334.1.S1_at

Description gb:AK106923.1
DB_XREF= gi:32992132
TID=Os.49334.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49334 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-B07, full insert sequence.
FL= gb:AK106923.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g716201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71590Os.6747.1.S1_a_at11/111+41797132..41805170expressed protein
LOC_Os01g71590Os.23761.1.S1_at1/111+41797132..41805170expressed protein
LOC_Os01g71599OsAffx.24004.1.S1_at10/111+41807380..41809240hypothetical protein
LOC_Os01g71608Os.26710.1.S1_at2/111+41812198..41812863hypothetical protein
LOC_Os01g71620OsAffx.32010.2.S1_s_at11/111+41819578..41826524hypothetical protein
LOC_Os01g71620OsAffx.32010.3.S1_x_at5/111+41819578..41826524hypothetical protein
LOC_Os01g71620OsAffx.32010.2.S1_x_at4/111+41819578..41826524hypothetical protein
LOC_Os01g71620Os.49334.1.S1_at1/111+41819578..41826524hypothetical protein
LOC_Os01g71630OsAffx.21879.1.S1_at11/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_s_at11/111+41837041..41846521expressed protein
LOC_Os01g71630OsAffx.21879.1.S1_x_at10/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_x_at8/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_at7/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.2.S1_x_at5/111+41837041..41846521expressed protein
LOC_Os01g71640OsAffx.21878.2.S1_x_at11/111+41851360..41852302hypothetical protein
LOC_Os01g71640OsAffx.21878.2.S1_at11/111+41851360..41852302hypothetical protein
LOC_Os01g71640OsAffx.21878.1.S1_x_at9/111+41851360..41852302hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.49334.1.S1_at--878--9231NONE
TCCTCATGCCGGAGACGGGTCGCCG
NONE
Os.49334.1.S1_at--213--5131NONE
GCAAAAGTCCCTGCGCCTGAGACGA
NONE
Os.49334.1.S1_at--485--10091NONE
TAGGCGAGGCGATCCGGTCTGTATC
NONE
Os.49334.1.S1_at--542--10131NONE
TATCGGATTGGATCAGGAGGTGCTC
NONE
Os.49334.1.S1_at--847--5631NONE
GACACGCGCGCTGATATGGGACATT
NONE
Os.49334.1.S1_at--1109--7611NONE
GGGACATTGGATCTAAATTCTTCAG
NONE
Os.49334.1.S1_at--367--2231Chr01:41826042..41826061 (20 bp)
AAATTCTTCAGATGGGTTTCAACCG
LOC_Os01g71620
Os.49334.1.S1_at--338--6831Chr11:19780238..19780258 (21 bp)
GTTTCAACCGTTGGATGTGTCACGT
NONE
Os.49334.1.S1_at--955--5631NONE
GACAGTGTTCTGTGGATATTTACGA
NONE
Os.49334.1.S1_at--221--9952Chr03:31108786..31108811 (25 bp)
TACGAAGGGCATTAGGCTGCTGCTT
NONE
Os.49334.1.S1_at--439--9111Chr03:31108804..31108828 (25 bp)
TGCTGCTTGCCGAAGCAGCCGAGCA
NONE
Target Sequence
TCCTCATGCCGGAGACGGGTCGCCGCCGGGGGTGCGAGAGCGGCAGGGGCAAAAGTCCCTGCGCCTGAGACGACGGCGGC
AAACCGTGGGCGGCGACGGCGGCAGAACAGCTTGAGGGGAGCGATAGGATAAAGCCACGGAGGAGGAGATCGCGCAAGGG
GATAGGGAAGAGATCCGGGTGGAGGGCGCGGTGATTTGCCGGGGTAGGCGAGGCGATCCGGTCTGTATCGGATTGGATCA
GGAGGTGCTCGAGAGAGGCGCGCGGATGCGGAGGCGGCGCGGCGATTGCGGCAGAGAGGGAGGTGTGGGACACGCGCGCT
GATATGGGACATTGGATCTAAATTCTTCAGATGGGTTTCAACCGTTGGATGTGTCACGTGATGAATGAGTAAAACAATTT
GTTGAACCATAGGATAGATTATGTGGGAGCATATATGGTGAATTGGACAGTGTTCTGTGGATATTTACGAAGGGCATTAG
GCTGCTGCTTGCCGAAGCAGCCGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49334.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis