Browse Element(s) Details


OsAffx.21879.1.S1_at

Description gb:NM_189743.1
DB_XREF= gi:34906569
GEN=P0660F12.14
TID=OsAffx.21879.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (P0660F12.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7163011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71608Os.26710.1.S1_at2/111+41812198..41812863hypothetical protein
LOC_Os01g71620OsAffx.32010.2.S1_s_at11/111+41819578..41826524hypothetical protein
LOC_Os01g71620OsAffx.32010.3.S1_x_at5/111+41819578..41826524hypothetical protein
LOC_Os01g71620OsAffx.32010.2.S1_x_at4/111+41819578..41826524hypothetical protein
LOC_Os01g71620Os.49334.1.S1_at1/111+41819578..41826524hypothetical protein
LOC_Os01g71630OsAffx.21879.1.S1_at11/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_s_at11/111+41837041..41846521expressed protein
LOC_Os01g71630OsAffx.21879.1.S1_x_at10/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_x_at8/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_at7/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.2.S1_x_at5/111+41837041..41846521expressed protein
LOC_Os01g71640OsAffx.21878.2.S1_x_at11/111+41851360..41852302hypothetical protein
LOC_Os01g71640OsAffx.21878.2.S1_at11/111+41851360..41852302hypothetical protein
LOC_Os01g71640OsAffx.21878.1.S1_x_at9/111+41851360..41852302hypothetical protein
LOC_Os01g71650OsAffx.24006.1.S1_at11/111+41852572..41853264Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71660OsAffx.31070.1.S1_x_at1/111+41854160..41856413transposon protein, putative, unclassified
LOC_Os01g71670Os.1385.1.S1_at10/111+41860123..41862468Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71670Os.1385.2.S1_x_at7/111+41860123..41862468Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71680OsAffx.2458.1.S1_at11/111+41863826..41865169Glucan endo-1,3-beta-glucosidase GII precursor, putative
LOC_Os01g71690Os.42832.1.S1_at10/111+41866607..41872489recA protein, expressed
LOC_Os01g71690Os.25266.1.S1_at7/111+41866607..41872489recA protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21879.1.S1_at--96--10831Chr01:41839765..41839789 (25 bp)
TTGTGTGCAAAAAAGACGACTGATC
LOC_Os01g71630
OsAffx.21879.1.S1_at--343--9011Chr01:41839770..41839794 (25 bp)
TGCAAAAAAGACGACTGATCTCCCC
LOC_Os01g71630
OsAffx.21879.1.S1_at--605--2151Chr01:41841072..41841096 (25 bp)
ACAGCATGCGGTTGCTTACATGGGC
LOC_Os01g71630
OsAffx.21879.1.S1_at--620--7911Chr01:41841081..41841105 (25 bp)
GGTTGCTTACATGGGCCGCATGCAA
LOC_Os01g71630
OsAffx.21879.1.S1_at--850--9875Chr10:18250477..18250623 (25 bp)
TACATGGGCCGCATGCAAAAATAAA
NONE
OsAffx.21879.1.S1_at--998--2391Chr01:41841127..41841151 (25 bp)
AAAAAAAATCATGCCGGCCACGCGT
LOC_Os01g71630
OsAffx.21879.1.S1_at--829--2611Chr01:41841295..41841319 (25 bp)
AACCGCTCCTGCCAACAGATCTAGG
LOC_Os01g71630
OsAffx.21879.1.S1_at--921--9251Chr01:41841301..41841325 (25 bp)
TCCTGCCAACAGATCTAGGCTGGAG
LOC_Os01g71630
OsAffx.21879.1.S1_at--898--4371Chr01:41841306..41841330 (25 bp)
CCAACAGATCTAGGCTGGAGGAGGC
LOC_Os01g71630
OsAffx.21879.1.S1_at--564--991Chr01:41841324..41841348 (25 bp)
AGGAGGCTGAGCTGTCGCCGTTGCC
LOC_Os01g71630
OsAffx.21879.1.S1_at--604--4211Chr01:41841396..41841420 (25 bp)
CCGCCAACGGCGACAGTGAGGAGGG
LOC_Os01g71630
Target Sequence 
TTGTGTGCAAAAAAGACGACTGATCTCCCCCTGCAAATGTGTACGGAGGAAGCCTATGATTGGTATTACAACTCGTATTG
ATGAGCACTACACCATGGGCAACAGCATGCGGTTGCTTACATGGGCCGCATGCAAAAATAAAAATCTAAAAATCGCAAAA
AAAATCATGCCGGCCACGCGTCGGCGTCGTGGGATCCCGCTGCTCCCACCGTTTGCTCCCACCGCTGCCCGTTCCCGCCG
TCGGATCCAGGCGGGAGGAGGCCCGCCGCCGTTGCTCCCATCGACCACCAGCGTCGTCGTGGAAGTCGCCCACGCGTCGC
CGCCAACCGCTCCTGCCAACAGATCTAGGCTGGAGGAGGCTGAGCTGTCGCCGTTGCCGCCACCGCCTTGTCGGCGGCGG
GGAGGGGGGGGGACGGAGCCGGCCGCCGCCAACGGCGACAGTGAGGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21879.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis