Browse Element(s) Details


OsAffx.31070.1.S1_x_at

Description tigr:9639.m01874
TID=OsAffx.31070.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2001011/11hypothetical protein
LOC_Os07g160701/11hypothetical protein
LOC_Os06g381401/11hypothetical protein
LOC_Os01g716601/11transposon protein, putative, unclassified
LOC_Os09g141101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19960OsAffx.10632.1.S1_at2/1111+11465392..11471378retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g19960OsAffx.4941.1.S1_at1/1111+11465392..11471378retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g19970OsAffx.18275.2.S1_x_at11/1111+11473244..11473879hypothetical protein
LOC_Os11g19970OsAffx.18275.2.S1_at11/1111+11473244..11473879hypothetical protein
LOC_Os11g19970OsAffx.13786.1.S1_x_at2/1111+11473244..11473879hypothetical protein
LOC_Os11g19970OsAffx.18275.1.S1_x_at2/1111+11473244..11473879hypothetical protein
LOC_Os11g19980NANA11+11474914..11475132hypothetical protein
LOC_Os11g19990OsAffx.22699.1.S1_x_at2/1111+11479853..11484754retrotransposon protein, putative, unclassified
LOC_Os11g20000NANA11+11485424..11487082hypothetical protein
LOC_Os11g20010OsAffx.31070.1.S1_at11/1111+11490329..11493591hypothetical protein
LOC_Os11g20010OsAffx.31070.1.S1_x_at11/1111+11490329..11493591hypothetical protein
LOC_Os11g20020OsAffx.18954.1.S1_at10/1111+11497370..11499036hypothetical protein
LOC_Os11g20030NANA11+11503087..11508142retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20040OsAffx.18955.1.S1_at10/1111+11516093..11518499O-methyltransferase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31070.1.S1_x_at--109--3952Chr06:22592000..22592023 (24 bp)
CGGCTGAACGCGAGGCTGCGATCAA
LOC_Os06g38140
OsAffx.31070.1.S1_x_at--448--2071Chr11:11491005..11491029 (25 bp)
ACTTGTGGACCACCAGACGGCGACG
LOC_Os11g20010
OsAffx.31070.1.S1_x_at--1147--7551Chr11:11490969..11490993 (25 bp)
GGGCGTCACCAAAGAGGCGTCCGAC
LOC_Os11g20010
OsAffx.31070.1.S1_x_at--593--9951Chr11:11490930..11490954 (25 bp)
TACCACGAGTGGAAACTACGTTTCG
LOC_Os11g20010
OsAffx.31070.1.S1_x_at--1015--951Chr11:11490875..11490899 (25 bp)
AGGACCAGTCGGAAGGCACCAAGCC
LOC_Os11g20010
OsAffx.31070.1.S1_x_at--74--3231Chr11:11490678..11490880 (25 bp)
CAAGCCCGGCGCTTTATGAGAAAGA
LOC_Os11g20010
OsAffx.31070.1.S1_x_at--156--2774Chr09:8359448..8359472 (25 bp)
AAGAGAAAACTCTTCGCAGGGCGGC
LOC_Os09g14110
OsAffx.31070.1.S1_x_at--71--2891Chr11:11490615..11490639 (25 bp)
AAGGTGGGACCGGTGCAACTACCAG
LOC_Os11g20010
OsAffx.31070.1.S1_x_at--413--9091Chr11:11490425..11490449 (25 bp)
TGCTCACGGCGTAGGCCATGAGATT
LOC_Os11g20010
OsAffx.31070.1.S1_x_at--132--8291Chr11:11490380..11490404 (25 bp)
GGCATCAGCAAACCAGCGCGCCGAG
LOC_Os11g20010
OsAffx.31070.1.S1_x_at--1086--4071Chr11:11490359..11490383 (25 bp)
CGAGCAGCTGCCACGCGTCAGCAAA
LOC_Os11g20010
Target Sequence 
CGGCTGAACGCGAGGCTGCGATCAACGCTCTCCCTCTGACGGACGTCATCGGGCCACTTGTGGACCACCAGACGGCGACG
TCGTTGAAGGAGGGCGTCACCAAAGAGGCGTCCGACGCTGCTGCTGCTGCTACCACGAGTGGAAACTACGTTTCGAAGAA
GGGGAGGAAATTCTCCTCCGTACTCAGGACCAGTCGGAAGGCACCAAGCCCGGCGCTTTATGAGAAAGAGAAAACTCTTC
GCAGGGCGGCGCGGGCGAAGGCGACGCAAGGTGGGACCGGTGCAACTACCAGCGCGTCCCCTGCGACGGCCTCGACAGAC
GTCGTGGTCGCTACTAGGGACCGGGAGGTGACGCCGAGTAGCCCCGCCGTCGGCCTTGTGCCTGCTCGGGGCCCGCCTGC
CGATGCCCTCACCTCGGGGGAGCTCCAAGCGGAGCTGGAGCGCATCCTCCAGGATGGTGCTCACGGCGTAGGCCATGAGA
TTGAGGAGACCAGGGCGGCGGCGGCATCAGCAAACCAGCGCGCCGAGCAGCTGCCACGCGTCAGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31070.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis