Browse Element(s) Details


OsAffx.13786.1.S1_x_at

Description tigr:9632.m01111
TID=OsAffx.13786.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1236011/11hypothetical protein
LOC_Os07g189202/11retrotransposon protein, putative, unclassified
LOC_Os02g206702/11hypothetical protein
LOC_Os11g199702/11hypothetical protein
LOC_Os12g143742/11retrotransposon protein, putative, unclassified
LOC_Os06g260602/11retrotransposon protein, putative, unclassified
LOC_Os03g358702/11retrotransposon protein, putative, unclassified
LOC_Os07g263702/11hypothetical protein
LOC_Os03g371942/11retrotransposon protein, putative, unclassified
LOC_Os01g441502/11retrotransposon protein, putative, unclassified
LOC_Os02g051801/11retrotransposon protein, putative, unclassified
LOC_Os08g224801/11retrotransposon protein, putative, unclassified
LOC_Os03g432701/11retrotransposon protein, putative, unclassified
LOC_Os06g261501/11retrotransposon protein, putative, unclassified
LOC_Os11g195801/11hypothetical protein
LOC_Os08g222841/11retrotransposon protein, putative, unclassified
LOC_Os03g319861/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g12310Os.45173.1.S1_x_at5/114+6771837..6778492retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g12320Os.45173.1.S1_x_at2/114+6781135..6787327retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g12330OsAffx.8847.1.S1_x_at2/114+6788301..6788726retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g12330OsAffx.8338.1.S1_x_at1/114+6788301..6788726retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g12340OsAffx.828.1.S1_x_at1/114+6789385..6789849retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g12350OsAffx.22699.1.S1_x_at2/114+6792842..6796567retrotransposon protein, putative, unclassified
LOC_Os04g12360OsAffx.13786.1.S1_x_at11/114+6797633..6798387hypothetical protein
LOC_Os04g12360OsAffx.18275.1.S1_x_at1/114+6797633..6798387hypothetical protein
LOC_Os04g12360OsAffx.18275.2.S1_at1/114+6797633..6798387hypothetical protein
LOC_Os04g12360OsAffx.18275.2.S1_x_at1/114+6797633..6798387hypothetical protein
LOC_Os04g12370Os.10626.4.A1_s_at11/114+6802248..6802679hypothetical protein
LOC_Os04g12370Os.40531.1.A1_x_at3/114+6802248..6802679hypothetical protein
LOC_Os04g12380NANA4+6809598..6811322retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g12390Os.47463.1.S1_x_at6/114+6813923..6822380transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g12390Os.14491.2.S1_x_at5/114+6813923..6822380transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g12390Os.51279.1.S1_at4/114+6813923..6822380transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13786.1.S1_x_at--357--3235Chr08:13415442..13415461 (20 bp)
CAAGCACGGAACCAGTTCTTAAACT
LOC_Os08g22480
OsAffx.13786.1.S1_x_at--360--1031Chr04:6798131..6798155 (25 bp)
AGGTAAGAGAAGTGGCTGATGTCCC
LOC_Os04g12360
OsAffx.13786.1.S1_x_at--452--1451Chr04:6798124..6798148 (25 bp)
AGAAGTGGCTGATGTCCCCGGGACC
LOC_Os04g12360
OsAffx.13786.1.S1_x_at--958--9111Chr04:6798034..6798058 (25 bp)
TGCTGAGATGATTCTCATGGAAATC
LOC_Os04g12360
OsAffx.13786.1.S1_x_at--228--10512Chr12:8193599..8193679 (25 bp)
AGGTGACAACTCTCAGGGAGTTCAA
LOC_Os12g14374
OsAffx.13786.1.S1_x_at--965--4172Chr11:11473343..11473402 (25 bp)
CCCAGGGAGTTCAAGTTGCAGTTCA
LOC_Os11g19970
OsAffx.13786.1.S1_x_at--677--10712Chr12:8193669..8193728 (25 bp)
AGGGAGTTCAAGTTGCAGTTCAACA
LOC_Os12g14374
OsAffx.13786.1.S1_x_at--695--5211Chr04:6797741..6797765 (25 bp)
GAATTATCAGCCACTAATCACCGAT
LOC_Os04g12360
OsAffx.13786.1.S1_x_at--429--4351Chr04:6797710..6797734 (25 bp)
CCAGTTGTCCAGTCGGCCATTAATG
LOC_Os04g12360
OsAffx.13786.1.S1_x_at--339--3451Chr04:6797701..6797725 (25 bp)
CAGTCGGCCATTAATGCACCATCGG
LOC_Os04g12360
OsAffx.13786.1.S1_x_at--404--9451Chr04:6797680..6797704 (25 bp)
TCGGCTAAGCCGATGGCACCATTAC
LOC_Os04g12360
Target Sequence 
CAAGCACGGAACCAGTTCTTAAACTCATTTATGCAGACCCGCAAGGGGACAATGGTGCAAAAGTACAAGGTAAGAGAAGT
GGCTGATGTCCCCGGGACCGGTTCTTCCAAGGATGGAGGAGTGAAACAAGCTCCAGATGGCTCGGCTCAACCGAGCAACA
AAGGTGCTGAGATGATTCTCATGGAAATCAAGGTGACAACTCTCAGGGAGTTCAAGGAGTTCAAGGTGATGGTGCCCAGG
GAGTTCAAGTTGCAGTTCAACAACTTCCAAGATCAGGTTGACTATGCTGTACAGCATGCTTTGATCAATCAATCTGGAAT
ATTAACCAATACTTTAGCAAACATGGTGAAGTCAATGGTTGATGGTTCAATGGCCAAGTATCAAGCTACAGGACCAGTCT
ACTTACCAGGAGGGGTGTTCCCGAATTATCAGCCACTAATCACCGATAATCAACCAGTTGTCCAGTCGGCCATTAATGCA
CCATCGGCTAAGCCGATGGCACCATTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13786.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis