Browse Element(s) Details


OsAffx.18275.2.S1_at

Description tigr:9639.m01870
TID=OsAffx.18275.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1997011/11hypothetical protein
LOC_Os04g123601/11hypothetical protein
LOC_Os08g224801/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19930NANA11+11450070..11452237hypothetical protein
LOC_Os11g19940OsAffx.20387.1.S1_x_at1/1111+11452532..11455172retrotransposon protein, putative, unclassified
LOC_Os11g19950OsAffx.21161.1.S1_at2/1111+11455425..11460215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g19960OsAffx.10632.1.S1_at2/1111+11465392..11471378retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g19960OsAffx.4941.1.S1_at1/1111+11465392..11471378retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g19970OsAffx.18275.2.S1_x_at11/1111+11473244..11473879hypothetical protein
LOC_Os11g19970OsAffx.18275.2.S1_at11/1111+11473244..11473879hypothetical protein
LOC_Os11g19970OsAffx.13786.1.S1_x_at2/1111+11473244..11473879hypothetical protein
LOC_Os11g19970OsAffx.18275.1.S1_x_at2/1111+11473244..11473879hypothetical protein
LOC_Os11g19980NANA11+11474914..11475132hypothetical protein
LOC_Os11g19990OsAffx.22699.1.S1_x_at2/1111+11479853..11484754retrotransposon protein, putative, unclassified
LOC_Os11g20000NANA11+11485424..11487082hypothetical protein
LOC_Os11g20010OsAffx.31070.1.S1_at11/1111+11490329..11493591hypothetical protein
LOC_Os11g20010OsAffx.31070.1.S1_x_at11/1111+11490329..11493591hypothetical protein
LOC_Os11g20020OsAffx.18954.1.S1_at10/1111+11497370..11499036hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18275.2.S1_at--1035--2793Chr11:11473355..11473379 (25 bp)
AAGGTGACGGCCCTAATCAAGACGG
LOC_Os11g19970
OsAffx.18275.2.S1_at--983--7751Chr11:11473357..11473381 (25 bp)
GGTGACGGCCCTAATCAAGACGGCG
LOC_Os11g19970
OsAffx.18275.2.S1_at--727--8911Chr11:11473359..11473383 (25 bp)
TGACGGCCCTAATCAAGACGGCGAT
LOC_Os11g19970
OsAffx.18275.2.S1_at--579--1931Chr11:11473361..11473385 (25 bp)
ACGGCCCTAATCAAGACGGCGATGC
LOC_Os11g19970
OsAffx.18275.2.S1_at--184--3231Chr11:11473372..11473396 (25 bp)
CAAGACGGCGATGCAACACAGTTGC
LOC_Os11g19970
OsAffx.18275.2.S1_at--1056--8371Chr11:11473378..11473402 (25 bp)
GGCGATGCAACACAGTTGCAGTTCA
LOC_Os11g19970
OsAffx.18275.2.S1_at--460--5031Chr11:11473395..11473419 (25 bp)
GCAGTTCAACAACTTTAGCGAACAT
LOC_Os11g19970
OsAffx.18275.2.S1_at--1160--9691Chr11:11473400..11473424 (25 bp)
TCAACAACTTTAGCGAACATGGTAA
LOC_Os11g19970
OsAffx.18275.2.S1_at--144--1651Chr11:11473539..11473563 (25 bp)
AGCCGGCCATTAATCCACCATCGGT
LOC_Os11g19970
OsAffx.18275.2.S1_at--165--8431Chr11:11473543..11473567 (25 bp)
GGCCATTAATCCACCATCGGTTCAG
LOC_Os11g19970
OsAffx.18275.2.S1_at--858--131Chr11:11473547..11473571 (25 bp)
ATTAATCCACCATCGGTTCAGCCGA
LOC_Os11g19970
Target Sequence 
AAGGTGACGGCCCTAATCAAGACGGCGATGCAACACAGTTGCAGTTCAACAACTTTAGCGAACATGGTAAAGTCAATGGT
TGATGGTTCAATGGCCGAGTATCAAGCTACAGGACTAGTCTACTTACCAGGACGGGTGTTCCCGAATTATCGGCCATTAA
TCATCGATAATCAACCAGTTGTCCAGCCGGCCATTAATCCACCATCGGTTCAGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18275.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis