Browse Element(s) Details


OsAffx.21161.1.S1_at

Description gb:NM_193716.1
DB_XREF= gi:34914515
GEN=OSJNBa0094H06.1
TID=OsAffx.21161.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0094H06.1 (OSJNBa0094H06.1), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3221011/11retrotransposon protein, putative, unclassified
LOC_Os12g127903/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g257503/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g323003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g248803/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g318602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g199502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g184201/11retrotransposon protein, putative, unclassified
LOC_Os10g201701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g290751/11retrotransposon protein, putative, unclassified
LOC_Os05g191001/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g145601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g275201/11transposon protein, putative, unclassified
LOC_Os06g214401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g208001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g295501/11hypothetical protein
LOC_Os04g115001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g257501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g147701/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32170Os.26824.1.S1_at11/111+17932018..17934421pentatricopeptide, putative, expressed
LOC_Os01g32184OsAffx.23471.1.S1_at11/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184Os.53528.1.A1_at11/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184OsAffx.2130.1.S1_at10/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184Os.47558.1.S1_at1/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32200OsAffx.11281.1.S1_at8/111+17956635..17957625hypothetical protein
LOC_Os01g32210OsAffx.21161.1.S1_at11/111+17958886..17962537retrotransposon protein, putative, unclassified
LOC_Os01g32220OsAffx.22947.2.S1_x_at10/111+17964705..17971069retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32220OsAffx.22947.1.S1_x_at7/111+17964705..17971069retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32220OsAffx.22947.3.S1_x_at5/111+17964705..17971069retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32220OsAffx.22947.5.S1_x_at3/111+17964705..17971069retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32230Os.14491.2.S1_x_at5/111+17973764..17982673transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32230Os.47463.1.S1_x_at5/111+17973764..17982673transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21161.1.S1_at--932--8831Chr01:17959597..17959621 (25 bp)
TGATAACTGCCACAACTGCCACGAG
LOC_Os01g32210
OsAffx.21161.1.S1_at--992--3811Chr01:17959582..17959606 (25 bp)
CTGCCACGAGCACGATGATCGCGAA
LOC_Os01g32210
OsAffx.21161.1.S1_at--305--8831Chr01:17959567..17959591 (25 bp)
TGATCGCGAACAACGGATGCCGGGC
LOC_Os01g32210
OsAffx.21161.1.S1_at--1132--958Chr12:7051309..7051328 (20 bp)
AGGACGCCGCCATAACGATGACGAT
LOC_Os12g12790
OsAffx.21161.1.S1_at--755--5614Chr12:7051158..7051374 (25 bp)
GACAACGGTGGACGACGACAGGATT
LOC_Os12g12790
OsAffx.21161.1.S1_at--810--995Chr12:7051369..7051389 (21 bp)
AGGATTCCCGAGAACCCGGACATAG
LOC_Os12g12790
OsAffx.21161.1.S1_at--124--5451Chr01:17959380..17959479 (25 bp)
GAACCCGGACATAGATATCCACGAA
LOC_Os01g32210
OsAffx.21161.1.S1_at--804--3551Chr01:17959371..17959394 (24 bp)
CATAGATATCCACGAAGGACATATG
LOC_Os01g32210
OsAffx.21161.1.S1_at--1079--4337Chr10:9795307..9795331 (25 bp)
CCAGCGCCGGGTGTAGAGCTTTCAA
LOC_Os10g20170
OsAffx.21161.1.S1_at--1154--7415Chr04:14914021..14914045 (25 bp)
GTGTAGAGCTTTCAACCGTTCGCTA
LOC_Os04g25750
OsAffx.21161.1.S1_at--561--3256Chr07:16083146..16083166 (21 bp)
CAACCGTTCGCTACGTGATGTCCGA
LOC_Os07g27520
Target Sequence 
TGATAACTGCCACAACTGCCACGAGCACGATGATCGCGAACAACGGATGCCGGGCGATACAGGTCGAGGACGCCGCCATA
ACGATGACGATGACGGAGATCGGCGCCGGGATGACAACGGTGGACGACGACAGGATTCCCGAGAACCCGGACATAGATAT
CCACGAAGGACATATGATCGCTGACAACCCACCGCCCCCAGCGCCGGGTGTAGAGCTTTCAACCGTTCGCTACGTGATGT
CCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21161.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis