Browse Element(s) Details


Os.26824.1.S1_at

Description gb:AK102377.1
DB_XREF= gi:32987586
TID=Os.26824.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26824 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033091P06, full insert sequence.
FL= gb:AK109825.1 gb:AK102377.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3217011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32120Os.53456.1.S1_at11/111+17908061..17908950EF hand family protein, expressed
LOC_Os01g32130Os.1423.1.S1_at11/111+17910565..17913133expressed protein
LOC_Os01g32140OsAffx.23469.1.S1_x_at9/111+17916024..17917040hypothetical protein
LOC_Os01g32140Os.47086.1.S1_at1/111+17916024..17917040hypothetical protein
LOC_Os01g32150OsAffx.11280.1.S1_at11/111+17925775..17926723hypothetical protein
LOC_Os01g32160OsAffx.23470.1.S1_at11/111+17927385..17928941hypothetical protein
LOC_Os01g32170Os.26824.1.S1_at11/111+17932018..17934421pentatricopeptide, putative, expressed
LOC_Os01g32184OsAffx.23471.1.S1_at11/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184Os.53528.1.A1_at11/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184OsAffx.2130.1.S1_at10/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184Os.47558.1.S1_at1/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32200OsAffx.11281.1.S1_at8/111+17956635..17957625hypothetical protein
LOC_Os01g32210OsAffx.21161.1.S1_at11/111+17958886..17962537retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26824.1.S1_at--261--5351Chr01:17933768..17933792 (25 bp)
GAAGTTGACCACCTAAATGATTCGT
LOC_Os01g32170
Os.26824.1.S1_at--573--6571Chr01:17933786..17933810 (25 bp)
GATTCGTGCACATGTTTACTGTTGT
LOC_Os01g32170
Os.26824.1.S1_at--199--3571Chr01:17933856..17933880 (25 bp)
CATACTACTGTGGTTGTGGTTTACT
LOC_Os01g32170
Os.26824.1.S1_at--588--7491Chr01:17933871..17933895 (25 bp)
GTGGTTTACTGGATATTGTCCCATG
LOC_Os01g32170
Os.26824.1.S1_at--127--6271Chr01:17934051..17934072 (22 bp)
GATGTGCTCATCTGCAGATGTCTTG
LOC_Os01g32170
Os.26824.1.S1_at--535--3611Chr01:17934069..17934093 (25 bp)
CTTGGATTGCTATGAGACCTGTGTA
LOC_Os01g32170
Os.26824.1.S1_at--1032--5991Chr01:17934082..17934106 (25 bp)
GAGACCTGTGTATGCCTCATGCAGT
LOC_Os01g32170
Os.26824.1.S1_at--861--6351Chr01:17934142..17934166 (25 bp)
GATGCCTCATTCGAAGTCTAACCAG
LOC_Os01g32170
Os.26824.1.S1_at--1039--10231Chr01:17934215..17934239 (25 bp)
TTTGGCCGCTTGTGCAACTCATATA
LOC_Os01g32170
Os.26824.1.S1_at--437--9291Chr01:17934269..17934293 (25 bp)
TCCGTTGCTTTGTTGGTCGGATACT
LOC_Os01g32170
Os.26824.1.S1_at--741--10471Chr01:17934358..17934382 (25 bp)
TTAAACTTTGACTCTCCATTTCCTT
LOC_Os01g32170
Target Sequence 
GAAGTTGACCACCTAAATGATTCGTGCACATGTTTACTGTTGTTGTTTGGGCCCTTCAAGATAAAAGATAACAGAGAAGA
GGTAGTGACATACTACTGTGGTTGTGGTTTACTGGATATTGTCCCATGAAGGAATTAGCTGGTTGATGTGTTTCTTGTTT
TAGGGAAACATTGATATGGCAGTTATTTACTGATGTGCTCATCTGCAGATGTCTTGGATTGCTATGAGACCTGTGTATGC
CTCATGCAGTGATATTGCATTGAATCAGGCAACTCAGGAAAAGATGATGCCTCATTCGAAGTCTAACCAGTGAACATAGA
ATTGGTAGGACATTATTTAGCATGNGGCAGCCCTTGGGTTTGGCCGCTTGTGCAACTCATATACACAAAATTTTCCATTG
TGTAAAGAATTTTCCGTTGCTTTGTTGGTCGGATACTNCTTCAGATGCTGTTGTTAAATTGAGATCATTTAGAAATCCCA
TTTCCTGTTAAACAAATACNATTAAACTTTGACTCTCCATTTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis