Browse Element(s) Details


OsAffx.23470.1.S1_at

Description tigr:9629.m02999
TID=OsAffx.23470.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3216011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32110NANA1+17903209..17906304transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32120Os.53456.1.S1_at11/111+17908061..17908950EF hand family protein, expressed
LOC_Os01g32130Os.1423.1.S1_at11/111+17910565..17913133expressed protein
LOC_Os01g32140OsAffx.23469.1.S1_x_at9/111+17916024..17917040hypothetical protein
LOC_Os01g32140Os.47086.1.S1_at1/111+17916024..17917040hypothetical protein
LOC_Os01g32150OsAffx.11280.1.S1_at11/111+17925775..17926723hypothetical protein
LOC_Os01g32160OsAffx.23470.1.S1_at11/111+17927385..17928941hypothetical protein
LOC_Os01g32170Os.26824.1.S1_at11/111+17932018..17934421pentatricopeptide, putative, expressed
LOC_Os01g32184OsAffx.23471.1.S1_at11/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184Os.53528.1.A1_at11/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184OsAffx.2130.1.S1_at10/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184Os.47558.1.S1_at1/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23470.1.S1_at--482--9771Chr01:17928803..17928827 (25 bp)
TAATGGCGGATATGTATGATCAACA
LOC_Os01g32160
OsAffx.23470.1.S1_at--103--2971Chr01:17928804..17928828 (25 bp)
AATGGCGGATATGTATGATCAACAG
LOC_Os01g32160
OsAffx.23470.1.S1_at--201--851Chr01:17928805..17928829 (25 bp)
ATGGCGGATATGTATGATCAACAGT
LOC_Os01g32160
OsAffx.23470.1.S1_at--230--8471Chr01:17928806..17928830 (25 bp)
TGGCGGATATGTATGATCAACAGTC
LOC_Os01g32160
OsAffx.23470.1.S1_at--1003--8351Chr01:17928807..17928831 (25 bp)
GGCGGATATGTATGATCAACAGTCC
LOC_Os01g32160
OsAffx.23470.1.S1_at--111--4691Chr01:17928808..17928832 (25 bp)
GCGGATATGTATGATCAACAGTCCT
LOC_Os01g32160
OsAffx.23470.1.S1_at--195--3971Chr01:17928809..17928833 (25 bp)
CGGATATGTATGATCAACAGTCCTT
LOC_Os01g32160
OsAffx.23470.1.S1_at--1147--7911Chr01:17928810..17928834 (25 bp)
GGATATGTATGATCAACAGTCCTTA
LOC_Os01g32160
OsAffx.23470.1.S1_at--149--6511Chr01:17928811..17928835 (25 bp)
GATATGTATGATCAACAGTCCTTAA
LOC_Os01g32160
OsAffx.23470.1.S1_at--1146--251Chr01:17928812..17928836 (25 bp)
ATATGTATGATCAACAGTCCTTAAC
LOC_Os01g32160
OsAffx.23470.1.S1_at--993--10111Chr01:17928813..17928837 (25 bp)
TATGTATGATCAACAGTCCTTAACG
LOC_Os01g32160
Target Sequence 
TAATGGCGGATATGTATGATCAACAGTCCTTAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23470.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis