Browse Element(s) Details


OsAffx.23471.1.S1_at

Description tigr:9629.m03001
TID=OsAffx.23471.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3218411/11Tetratricopeptide repeat protein 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32140OsAffx.23469.1.S1_x_at9/111+17916024..17917040hypothetical protein
LOC_Os01g32140Os.47086.1.S1_at1/111+17916024..17917040hypothetical protein
LOC_Os01g32150OsAffx.11280.1.S1_at11/111+17925775..17926723hypothetical protein
LOC_Os01g32160OsAffx.23470.1.S1_at11/111+17927385..17928941hypothetical protein
LOC_Os01g32170Os.26824.1.S1_at11/111+17932018..17934421pentatricopeptide, putative, expressed
LOC_Os01g32184OsAffx.23471.1.S1_at11/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184Os.53528.1.A1_at11/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184OsAffx.2130.1.S1_at10/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184Os.47558.1.S1_at1/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32200OsAffx.11281.1.S1_at8/111+17956635..17957625hypothetical protein
LOC_Os01g32210OsAffx.21161.1.S1_at11/111+17958886..17962537retrotransposon protein, putative, unclassified
LOC_Os01g32220OsAffx.22947.2.S1_x_at10/111+17964705..17971069retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32220OsAffx.22947.1.S1_x_at7/111+17964705..17971069retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32220OsAffx.22947.3.S1_x_at5/111+17964705..17971069retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32220OsAffx.22947.5.S1_x_at3/111+17964705..17971069retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32230Os.14491.2.S1_x_at5/111+17973764..17982673transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32230Os.47463.1.S1_x_at5/111+17973764..17982673transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23471.1.S1_at--629--1391Chr01:17944934..17944958 (25 bp)
AGACGGATAGAACTGCGCTTATTAT
LOC_Os01g32184
OsAffx.23471.1.S1_at--51--2531Chr01:17944891..17944915 (25 bp)
AACTATGGCATGTAGACCAGAGTTT
LOC_Os01g32184
OsAffx.23471.1.S1_at--587--8951Chr01:17944854..17944878 (25 bp)
TGAAAATTCTTCCATCTTAACCTTT
LOC_Os01g32184
OsAffx.23471.1.S1_at--954--4311Chr01:17944843..17944867 (25 bp)
CCATCTTAACCTTTTGAACTCGCAT
LOC_Os01g32184
OsAffx.23471.1.S1_at--360--5471Chr01:17944828..17944852 (25 bp)
GAACTCGCATTTTATCTTATTCTAA
LOC_Os01g32184
OsAffx.23471.1.S1_at--340--10331Chr01:17944809..17944833 (25 bp)
TTCTAAATCAAAGAGGCTTCCTACT
LOC_Os01g32184
OsAffx.23471.1.S1_at--988--4911Chr01:17944794..17944818 (25 bp)
GCTTCCTACTTACCAACCATGAATA
LOC_Os01g32184
OsAffx.23471.1.S1_at--356--7271Chr01:17944754..17944778 (25 bp)
GTCCATATTCATGCAACTTGGCAAA
LOC_Os01g32184
OsAffx.23471.1.S1_at--784--2031Chr01:17944666..17944690 (25 bp)
ACTTTTACGAAATATGCTAGACTGC
LOC_Os01g32184
OsAffx.23471.1.S1_at--1018--4851Chr01:17944651..17944675 (25 bp)
GCTAGACTGCGACTAATAAACCTTT
LOC_Os01g32184
OsAffx.23471.1.S1_at--170--2731Chr01:17944591..17944615 (25 bp)
AAGCAAGCGGCGTTGGTTGAACAGA
LOC_Os01g32184
Target Sequence 
AGACGGATAGAACTGCGCTTATTATGGGACGGAGGGAGTATGTAACTATGGCATGTAGACCAGAGTTTAACATAAACAGA
TGAAAATTCTTCCATCTTAACCTTTTGAACTCGCATTTTATCTTATTCTAAATCAAAGAGGCTTCCTACTTACCAACCAT
GAATATAAGAACTTTATGTTGTCCATATTCATGCAACTTGGCAAAACAAAGCAAAATAACACAAAATAGAATACATCTTT
TTTCATAACTATAGCGATCTATGGAGTTACTTTTACGAAATATGCTAGACTGCGACTAATAAACCTTTAGTTCATTGGGT
AAATAAAATATTGCTGAGAAGACAAGCAAGCGGCGTTGGTTGAACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23471.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis