Browse Element(s) Details


Os.53528.1.A1_at

Description gb:AK073118.1
DB_XREF= gi:32983141
TID=Os.53528.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.53528 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033011J18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033011J18, full insert sequence.
FL= gb:AK073118.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3218411/11Tetratricopeptide repeat protein 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32140OsAffx.23469.1.S1_x_at9/111+17916024..17917040hypothetical protein
LOC_Os01g32140Os.47086.1.S1_at1/111+17916024..17917040hypothetical protein
LOC_Os01g32150OsAffx.11280.1.S1_at11/111+17925775..17926723hypothetical protein
LOC_Os01g32160OsAffx.23470.1.S1_at11/111+17927385..17928941hypothetical protein
LOC_Os01g32170Os.26824.1.S1_at11/111+17932018..17934421pentatricopeptide, putative, expressed
LOC_Os01g32184OsAffx.23471.1.S1_at11/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184Os.53528.1.A1_at11/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184OsAffx.2130.1.S1_at10/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32184Os.47558.1.S1_at1/111+17939181..17953800Tetratricopeptide repeat protein 5, putative, expressed
LOC_Os01g32200OsAffx.11281.1.S1_at8/111+17956635..17957625hypothetical protein
LOC_Os01g32210OsAffx.21161.1.S1_at11/111+17958886..17962537retrotransposon protein, putative, unclassified
LOC_Os01g32220OsAffx.22947.2.S1_x_at10/111+17964705..17971069retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32220OsAffx.22947.1.S1_x_at7/111+17964705..17971069retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32220OsAffx.22947.3.S1_x_at5/111+17964705..17971069retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32220OsAffx.22947.5.S1_x_at3/111+17964705..17971069retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32230Os.14491.2.S1_x_at5/111+17973764..17982673transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32230Os.47463.1.S1_x_at5/111+17973764..17982673transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53528.1.A1_at--160--1651Chr01:17939740..17939764 (25 bp)
AGCGCTATCAGTTCAAATCAATCCG
LOC_Os01g32184
Os.53528.1.A1_at--817--3071Chr01:17939725..17939749 (25 bp)
AATCAATCCGTGTGGACTTTCCAGA
LOC_Os01g32184
Os.53528.1.A1_at--1161--6631Chr01:17939660..17939684 (25 bp)
GTTGTACGAGCTTCAATCCATGCAC
LOC_Os01g32184
Os.53528.1.A1_at--179--9891Chr01:17939496..17939520 (25 bp)
TACATTGTGGCCAGTTTTGTCAGCT
LOC_Os01g32184
Os.53528.1.A1_at--191--6371Chr01:17939458..17939482 (25 bp)
GATCCACACAGGGATGCTTTCGTTG
LOC_Os01g32184
Os.53528.1.A1_at--1135--4291Chr01:17939400..17939424 (25 bp)
CCTTTGCTTAGTGTGCTATCCATTA
LOC_Os01g32184
Os.53528.1.A1_at--970--1171Chr01:17939338..17939362 (25 bp)
AGTACTTGTACCCTGTGTAATCATA
LOC_Os01g32184
Os.53528.1.A1_at--1048--9591Chr01:17939318..17939342 (25 bp)
TCATATAGGATTGTCGGCTGCTCGA
LOC_Os01g32184
Os.53528.1.A1_at--25--8331Chr01:17939303..17939327 (25 bp)
GGCTGCTCGATGACTGTTGCTTAGT
LOC_Os01g32184
Os.53528.1.A1_at--310--8531Chr01:17939266..17939290 (25 bp)
TGGACTGTAAGTTCGGCCATTCGAT
LOC_Os01g32184
Os.53528.1.A1_at--474--5211Chr01:17939198..17939222 (25 bp)
GAATTGCCTTGGTGAGCATCTTTGA
LOC_Os01g32184
Target Sequence 
AGCGCTATCAGTTCAAATCAATCCGTGTGGACTTTCCAGAACAGATTCTTGTTAATGAAAAAGCTCCACCACCTCATCAT
GTTGTACGAGCTTCAATCCATGCACACAATAAACCATGACTCTGGGCAAGAAAACATTTTTTGTGTTGAGAGATTACATC
AAGGGAGTGGAGGGACTGAGGATGGGAAGAGCTGTAAGGAAATGATCATATCACAATTTTGTGCAATTTTCTACTTTGTG
GTTCTACATTGTGGCCAGTTTTGTCAGCTGGTCATGTGATTTGATCCACACAGGGATGCTTTCGTTGGGGTTCAGCTGTT
CAAGGATGGTTTGATTTTTCNCCTTTGCTTAGTGTGCTATCCATTAACGGGGATGTACTGTGTTAGTTCGATGTAAATTT
GACAGTACTTGTACCCTGTGTAATCATATAGGATTGTCGGCTGCTCGATGACTGTTGCTTAGTGTTATGAGAAGATGGAC
TGTAAGTTCGGCCATTCGATGAATGGGGCATTTGTAAAGCTTGTTGCAGNAAATCAGATTCTTGAATTGCCTTGGTGAGC
ATCTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53528.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis