Browse Element(s) Details


OsAffx.22947.3.S1_x_at

Description gb:NM_196251.1
DB_XREF= gi:37533861
TID=OsAffx.22947.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) Similar to Sorghum bicolor 22 kDakafirinclusterpolyprotein (OSJNBa0094J09.1), mRNA.
PROD=Similar to Sorghum bicolor 22kDakafirinclusterpolyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2473011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g166507/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g194107/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g264607/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g197407/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g106207/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g343506/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g136106/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g215606/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g109206/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g201506/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g305806/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g296606/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g456306/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g383205/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g322205/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g191505/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g715305/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g134205/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g062685/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g415105/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g321005/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g182005/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g332505/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g062595/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g505005/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g297905/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g216405/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g413305/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g415205/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g415005/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g393305/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g397405/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g255905/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g475405/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g012405/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g166005/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g109204/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g047404/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g253304/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g493304/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g444904/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g539604/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g517704/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g293804/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g280104/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g174894/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g192404/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g044904/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g075204/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g164304/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g363603/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g034903/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g208103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g357103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g361903/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g152103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g291303/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g197803/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g155603/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g197703/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g558903/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g303703/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g420503/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g069802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g312402/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g494902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g400302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g054202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g222402/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g012802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g200202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g109701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g145801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g238101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g219501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g392501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g171201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g238301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g181601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g180301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g262601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g520701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g201101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g083901/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24700OsAffx.31828.1.S1_at2/1110+12363145..12370001retrotransposon protein, putative, unclassified
LOC_Os10g24700OsAffx.20615.1.S1_at1/1110+12363145..12370001retrotransposon protein, putative, unclassified
LOC_Os10g24700OsAffx.10371.1.S1_at1/1110+12363145..12370001retrotransposon protein, putative, unclassified
LOC_Os10g24700OsAffx.16111.1.S1_at1/1110+12363145..12370001retrotransposon protein, putative, unclassified
LOC_Os10g24700OsAffx.20604.2.S1_at1/1110+12363145..12370001retrotransposon protein, putative, unclassified
LOC_Os10g24700OsAffx.27937.1.S1_at1/1110+12363145..12370001retrotransposon protein, putative, unclassified
LOC_Os10g24710OsAffx.18381.1.S1_at10/1110+12374402..12379530expressed protein
LOC_Os10g24710OsAffx.22250.2.S1_x_at1/1110+12374402..12379530expressed protein
LOC_Os10g24710OsAffx.28492.1.S1_at1/1110+12374402..12379530expressed protein
LOC_Os10g24710Os.46610.1.A1_x_at1/1110+12374402..12379530expressed protein
LOC_Os10g24710Os.38751.1.A1_at1/1110+12374402..12379530expressed protein
LOC_Os10g24720OsAffx.20650.2.S1_at11/1110+12381939..12383147retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g24730OsAffx.22947.3.S1_x_at11/1110+12387039..12391577retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24730OsAffx.22947.2.S1_x_at8/1110+12387039..12391577retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24730OsAffx.22947.1.S1_x_at6/1110+12387039..12391577retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24730OsAffx.22947.5.S1_x_at3/1110+12387039..12391577retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24740NANA10+12399027..12399683retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24750NANA10+12400358..12401889retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24760OsAffx.8172.1.S1_at6/1110+12402301..12403986retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24770OsAffx.198.1.S1_at11/1110+12405299..12407095retrotransposon protein, putative, unclassified
LOC_Os10g24770OsAffx.20440.2.S1_x_at1/1110+12405299..12407095retrotransposon protein, putative, unclassified
LOC_Os10g24780NANA10+12407675..12408232retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24790Os.35344.3.S1_x_at11/1110+12414504..12420456transposon protein, putative, Mutator sub-class
LOC_Os10g24790Os.35344.18.S1_x_at10/1110+12414504..12420456transposon protein, putative, Mutator sub-class
LOC_Os10g24790OsAffx.22940.5.S1_x_at3/1110+12414504..12420456transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22947.3.S1_x_at--994--76149Chr12:11526330..11526354 (25 bp)
GGGAACGCCAGTTGTTTGGTACAGA
LOC_Os12g19780
OsAffx.22947.3.S1_x_at--1031--59529Chr12:11117157..11117181 (25 bp)
GAGAATCGCGCAATCTCGGCAGAAA
LOC_Os12g19150
OsAffx.22947.3.S1_x_at--9--28933Chr12:18204768..18204792 (25 bp)
AAGGGAGCTCGCTTTCGAAACAGGG
LOC_Os12g30370
OsAffx.22947.3.S1_x_at--757--3351Chr10:12391201..12391225 (25 bp)
CACGCTCTGTGGGACCATACAGGAT
LOC_Os10g24730
OsAffx.22947.3.S1_x_at--934--80934Chr12:18204874..18204898 (25 bp)
GGACCATACAGGATCTTGGAACGTA
LOC_Os12g30370
OsAffx.22947.3.S1_x_at--1141--28146Chr12:24721366..24721390 (25 bp)
AAGTTGCTTACCAGCTTGAGCTTCC
LOC_Os12g40030
OsAffx.22947.3.S1_x_at--252--2111Chr10:12391273..12391297 (25 bp)
ACATGCTTGGCATCGACAACGTGTT
LOC_Os10g24730
OsAffx.22947.3.S1_x_at--441--22978Chr12:24721440..24721464 (25 bp)
AAATGTTTGAGAGTTCCTGAGGAAC
LOC_Os12g40030
OsAffx.22947.3.S1_x_at--337--8211Chr10:12391343..12391367 (25 bp)
GGCAAGTACGGATCACATCGAAATT
LOC_Os10g24730
OsAffx.22947.3.S1_x_at--88--86741Chr12:18205047..18205071 (25 bp)
TGTGGAGAAGCCGACTCGTATCCTC
LOC_Os12g30370
OsAffx.22947.3.S1_x_at--831--53554Chr12:11526845..11526869 (25 bp)
GAAGATGAGTTGAAGGCCACCCACC
LOC_Os12g19780
Target Sequence 
GGGAACGCCAGTTGTTTGGTACAGAAGTTTTAAATGAGGCAGAAGAGAAAGTCAGAGCTGTCAGGGAAAGATTGAGAATC
GCGCAATCTCGGCAGAAAAGCTATGCAGACAACCGCCGAAGGGAGCTCGCTTTCGAAACAGGGGATTATGTGTATCTCCG
TGTCACTCCGCTCAGGGGATTACATCGCTTCCAAACCAAAGGAAAGTTGGCACCACGCTCTGTGGGACCATACAGGATCT
TGGAACGTAGAGGTGAAGTTGCTTACCAGCTTGAGCTTCCCTCCAACATGCTTGGCATCGACAACGTGTTCCACGTCTCT
CAGTTGAAGAAATGTTTGAGAGTTCCTGAGGAACAGGCAAGTACGGATCACATCGAAATTCAGGAAGATCTGACGTATGT
GGAGAAGCCGACTCGTATCCTCAAAACCAGTGAGAGAAGGACCAGAAACAAAGTAATCAGATTCTGCAAGGTTCAGTGGA
GTCATCACTCAGAAGAAGAGGCCACTTGGGAAAGAGAAGATGAGTTGAAGGCCACCCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22947.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis