Browse Element(s) Details


OsAffx.22250.2.S1_x_at

Description tigr:9635.m02133
TID=OsAffx.22250.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2256011/11hypothetical protein
LOC_Os04g095101/11hypothetical protein
LOC_Os10g247101/11expressed protein
LOC_Os09g029201/11hypothetical protein
LOC_Os08g292701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22520OsAffx.22628.1.S1_at11/117+12666279..12668588hypothetical protein
LOC_Os07g22534Os.30694.3.S1_x_at11/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.30694.1.S1_at11/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.30694.2.S1_at10/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534OsAffx.22627.1.S1_at10/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.7923.1.S1_x_at6/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.32421.1.A1_at1/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22550OsAffx.22699.1.S1_x_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.16111.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.20615.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.10039.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22560OsAffx.22250.2.S1_x_at11/117+12692786..12695518hypothetical protein
LOC_Os07g22570Os.34643.1.S1_at11/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22570Os.29747.1.S1_s_at4/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22570Os.29747.1.S1_at1/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22580Os.32592.1.S1_at11/117+12703673..12706326RhoGAP domain containing protein, expressed
LOC_Os07g22580Os.51549.1.S1_at1/117+12703673..12706326RhoGAP domain containing protein, expressed
LOC_Os07g22590OsAffx.16363.2.S1_at11/117+12708674..12711669hAT family dimerisation domain containing protein
LOC_Os07g22590OsAffx.16363.1.S1_x_at11/117+12708674..12711669hAT family dimerisation domain containing protein
LOC_Os07g22590OsAffx.16363.1.S1_at11/117+12708674..12711669hAT family dimerisation domain containing protein
LOC_Os07g22590OsAffx.4116.1.S1_x_at1/117+12708674..12711669hAT family dimerisation domain containing protein
LOC_Os07g22600Os.4599.1.S1_at10/117+12714877..12721201Spermidine synthase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22250.2.S1_x_at--304--4511Chr07:12693361..12693385 (25 bp)
GCCGATGATACCAAGTCAACTTTAT
LOC_Os07g22560
OsAffx.22250.2.S1_x_at--350--6371Chr07:12693282..12693306 (25 bp)
GATCCATCCTTGACAGACTCAACGA
LOC_Os07g22560
OsAffx.22250.2.S1_x_at--96--5471Chr07:12693235..12693259 (25 bp)
GAACTAGCTAATGCCATCACTCCAA
LOC_Os07g22560
OsAffx.22250.2.S1_x_at--192--2154Chr04:5071758..5071779 (22 bp)
ACAGCATACCTTGAGCAACATCGGC
LOC_Os04g09510
OsAffx.22250.2.S1_x_at--760--2651Chr07:12693117..12693141 (25 bp)
AAGCCAATAGAGCATCCATCAACGA
LOC_Os07g22560
OsAffx.22250.2.S1_x_at--631--8012Chr09:1373547..1373571 (25 bp)
GGAGGCTGGTCCAAGTGCAACTCAA
LOC_Os09g02920
OsAffx.22250.2.S1_x_at--838--6371Chr07:12693014..12693038 (25 bp)
GATAGAACTCCTAGCCGAACCGGAA
LOC_Os07g22560
OsAffx.22250.2.S1_x_at--1041--5511Chr07:12692959..12692983 (25 bp)
GAAAAGCTTGCCGATTTGCCAAAAG
LOC_Os07g22560
OsAffx.22250.2.S1_x_at--211--2351Chr07:12692897..12692921 (25 bp)
AAAGCATCTAACTGAACTGACCAAG
LOC_Os07g22560
OsAffx.22250.2.S1_x_at--496--5411Chr07:12692867..12692891 (25 bp)
GAAGCCGATCTCTAGCACTGATGCA
LOC_Os07g22560
OsAffx.22250.2.S1_x_at--318--3871Chr07:12692850..12692874 (25 bp)
CTGATGCAGCCGATGCCAAGACAAT
LOC_Os07g22560
Target Sequence 
GCCGATGATACCAAGTCAACTTTATTGGATATCTCAAAAAGGCATGAAGGCTCTCTGGAAACCTTGGTGACAAGCTGCGG
ATCCATCCTTGACAGACTCAACGAAATTCATGACAAGATCCCGGATGAACTAGCTAATGCCATCACTCCAACAGCATACC
TTGAGCAACATCGGCTTAAGCTTGAAAAAGCTCAAAAGAGGATTGCCGATCGGCGTGAGAGAAGAGATCTTGAAGCAACC
ATCCAAGCCAATAGAGCATCCATCAACGAAGAAAAAGCTAAGCTGGATGAATTGGAGGCTGGTCCAAGTGCAACTCAAGC
TAACATTGATCGGCTGAATAACCGGAAGATAGAACTCCTAGCCGAACCGGAACAACGCAATGCACAACTTGCTCTTGAAC
AAGAAAAGCTTGCCGATTTGCCAAAAGCCATCGAAGATCAGAAATCCAAGCTGAAAGCATCTGTAAAGCATCTAACTGAA
CTGACCAAGTCTTTGAAGCCGATCTCTAGCACTGATGCAGCCGATGCCAAGACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22250.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis