Browse Element(s) Details


Os.7923.1.S1_x_at

Description gb:BE228997
DB_XREF= gi:8955191
DB_XREF=98AS3454
CLONE=98AS3454
TID=Os.7923.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.7923 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g225346/11WD-repeat protein 18, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22494Os.33350.3.S1_x_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.3.S1_x_at11/117+12651670..12654761expressed protein
LOC_Os07g22494OsAffx.5404.1.S1_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.5530.2.S1_s_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.2.S1_x_at8/117+12651670..12654761expressed protein
LOC_Os07g22494Os.33350.1.S1_x_at4/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.2.S1_s_at4/117+12651670..12654761expressed protein
LOC_Os07g22494Os.5530.2.S1_x_at2/117+12651670..12654761expressed protein
LOC_Os07g22494Os.42141.1.S1_x_at1/117+12651670..12654761expressed protein
LOC_Os07g22510Os.30411.1.S1_at11/117+12663580..12664674expressed protein
LOC_Os07g22520OsAffx.22628.1.S1_at11/117+12666279..12668588hypothetical protein
LOC_Os07g22534Os.30694.3.S1_x_at11/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.30694.1.S1_at11/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.30694.2.S1_at10/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534OsAffx.22627.1.S1_at10/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.7923.1.S1_x_at6/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.32421.1.A1_at1/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22550OsAffx.22699.1.S1_x_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.16111.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.20615.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.10039.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22560OsAffx.22250.2.S1_x_at11/117+12692786..12695518hypothetical protein
LOC_Os07g22570Os.34643.1.S1_at11/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22570Os.29747.1.S1_s_at4/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22570Os.29747.1.S1_at1/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22580Os.32592.1.S1_at11/117+12703673..12706326RhoGAP domain containing protein, expressed
LOC_Os07g22580Os.51549.1.S1_at1/117+12703673..12706326RhoGAP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7923.1.S1_x_at--874--2471NONE
AACTATTCTACCTGGAGCAAATTTT
NONE
Os.7923.1.S1_x_at--963--2031NONE
ACTATTCTACCTGGAGCAAATTTTA
NONE
Os.7923.1.S1_x_at--640--3691NONE
CTATTCTACCTGGAGCAAATTTTAT
NONE
Os.7923.1.S1_x_at--930--3731NONE
CTAATTATCACTTCCGGCCTCAGCT
NONE
Os.7923.1.S1_x_at--346--9751NONE
TAATTATCACTTCCGGCCTCAGCTC
NONE
Os.7923.1.S1_x_at--20--3931Chr07:12674599..12674623 (25 bp)
CGGCCTCAGCTCCTCAAAAGTGTAC
LOC_Os07g22534
Os.7923.1.S1_x_at--450--8431Chr07:12674598..12674622 (25 bp)
GGCCTCAGCTCCTCAAAAGTGTACT
LOC_Os07g22534
Os.7923.1.S1_x_at--810--4451Chr07:12674597..12674621 (25 bp)
GCCTCAGCTCCTCAAAAGTGTACTT
LOC_Os07g22534
Os.7923.1.S1_x_at--889--1971Chr07:12674552..12674576 (25 bp)
ACTGAATTTATGTGTACTTTGTGTC
LOC_Os07g22534
Os.7923.1.S1_x_at--380--791Chr07:12674543..12674567 (25 bp)
ATGTGTACTTTGTGTCTTTGTATTG
LOC_Os07g22534
Os.7923.1.S1_x_at--670--8671Chr07:12674542..12674566 (25 bp)
TGTGTACTTTGTGTCTTTGTATTGA
LOC_Os07g22534
Target Sequence 
AACTATTCTACCTGGAGCAAATTTTATNCTAATTATCACTTCCGGCCTCAGCTCCTCAAAAGTGTACTTNGTGCTTCTCT
GGTTCCANCACTGAATTTATGTGTACTTTGTGTCTTTGTATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7923.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis