Browse Element(s) Details


OsAffx.10039.1.S1_at

Description gb:NM_187838.1
DB_XREF= gi:34902761
GEN=P0710F09.50
TID=OsAffx.10039.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) retroelement-like (P0710F09.50), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g179301/11retrotransposon protein, putative, unclassified
LOC_Os07g230201/11retrotransposon protein, putative, unclassified
LOC_Os07g244001/11retrotransposon protein, putative, unclassified
LOC_Os04g137601/11retrotransposon protein, putative, unclassified
LOC_Os04g184801/11retrotransposon protein, putative, unclassified
LOC_Os08g040601/11retrotransposon protein, putative, unclassified
LOC_Os07g225501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17890Os.45173.1.S1_x_at1/118+10969748..10976599retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g17900OsAffx.20733.1.A1_x_at1/118+10977364..10978215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g17910OsAffx.22699.1.S1_x_at2/118+10981041..10985882retrotransposon protein, putative, unclassified, expressed
LOC_Os08g17910OsAffx.20553.1.S1_at1/118+10981041..10985882retrotransposon protein, putative, unclassified, expressed
LOC_Os08g17920NANA8+10987261..10987488hypothetical protein
LOC_Os08g17930Os.39795.1.S1_at1/118+10991414..10994333retrotransposon protein, putative, unclassified
LOC_Os08g17930OsAffx.10039.1.S1_at1/118+10991414..10994333retrotransposon protein, putative, unclassified
LOC_Os08g17940OsAffx.3761.1.S1_x_at1/118+10997059..11000135hypothetical protein
LOC_Os08g17950NANA8+11004626..11005114retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g17960OsAffx.17054.1.S1_at1/118+11009766..11012993hypothetical protein
LOC_Os08g17960OsAffx.30032.3.S1_at1/118+11009766..11012993hypothetical protein
LOC_Os08g17970OsAffx.17057.1.S1_at11/118+11015153..11015431hypothetical protein
LOC_Os08g17980NANA8+11015728..11016339Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os08g17990OsAffx.29260.1.S1_at1/118+11019160..11025246retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10039.1.S1_at--971--651Chr07:12983383..12983407 (25 bp)
ATGAAGCATGTTTCCCGAGAGCAAA
LOC_Os07g23020
OsAffx.10039.1.S1_at--633--2211NONE
ACAAGCCGATGAAGCCTCTAACAAA
NONE
OsAffx.10039.1.S1_at--630--191Chr07:12984194..12984218 (25 bp)
ATTTCTGATTTTCCTAAGCAGTGGC
NONE
OsAffx.10039.1.S1_at--64--1531Chr07:12984210..12984234 (25 bp)
AGCAGTGGCATACCAGATTAGCTGA
NONE
OsAffx.10039.1.S1_at--131--6451Chr07:12984267..12984291 (25 bp)
GATCAATTCAAGTCCCTACTTACAA
NONE
OsAffx.10039.1.S1_at--284--10431Chr07:12984317..12984341 (25 bp)
TTACCGTGGGAAAGTACCATCGGCT
NONE
OsAffx.10039.1.S1_at--562--491Chr07:12984335..12984359 (25 bp)
ATCGGCTCGAGAAGGATTGCTATCC
NONE
OsAffx.10039.1.S1_at--1073--371Chr07:12984384..12984408 (25 bp)
ATCACAATCTCATGGTGGACGAGTC
NONE
OsAffx.10039.1.S1_at--947--6611Chr07:12984415..12984439 (25 bp)
GTTGGTTCAGTCTAGGATGCGTGTT
NONE
OsAffx.10039.1.S1_at--41--1231Chr07:12984493..12984517 (25 bp)
AGTTGTGCCCAATTCTTTTACAGAA
NONE
OsAffx.10039.1.S1_at--1004--6539Chr10:12128662..12128681 (20 bp)
GATTTTGCCGATAGGAACTCACGAC
NONE
Target Sequence 
ATGAAGCATGTTTCCCGAGAGCAAAATGCAGAAGCTAATGATTTGGCTCAGGGGGGCATCGGGATACAAGCCGATGAAGC
CTCTAACAAAAGTTTGATTAAGTTGATCAAGAGGAAGATTTCTGATTTTCCTAAGCAGTGGCATACCAGATTAGCTGAAG
CATTGTGGTCTTATCGGATGGCTTGTCATAGATCAATTCAAGTCCCTACTTACAAGCTTGTTTATGGGCATGAGGTTGTT
TTACCGTGGGAAAGTACCATCGGCTCGAGAAGGATTGCTATCCAAGATGAGTTAACAGCCGATGATTATCACAATCTCAT
GGTGGACGAGTCAAAAGAGTTGGTTCAGTCTAGGATGCGTGTTGTGGAAAAAGTAACAAAGGATAAGGAGATAATTGCTC
GTCATTATAAGAAGAAAGTTGTGCCCAATTCTTTTACAGAAGGCAAGTTGGTTTGGAAGTTGATTTTGCCGATAGGAACT
CACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10039.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis