Browse Element(s) Details


Os.39795.1.S1_at

Description gb:CF303931
DB_XREF= gi:33675692
DB_XREF=ABF1--03-J22.g1
CLONE=ABF1--03-J22
TID=Os.39795.1
CNT=23
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39795 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g179301/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17890Os.45173.1.S1_x_at1/118+10969748..10976599retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g17900OsAffx.20733.1.A1_x_at1/118+10977364..10978215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g17910OsAffx.22699.1.S1_x_at2/118+10981041..10985882retrotransposon protein, putative, unclassified, expressed
LOC_Os08g17910OsAffx.20553.1.S1_at1/118+10981041..10985882retrotransposon protein, putative, unclassified, expressed
LOC_Os08g17920NANA8+10987261..10987488hypothetical protein
LOC_Os08g17930Os.39795.1.S1_at1/118+10991414..10994333retrotransposon protein, putative, unclassified
LOC_Os08g17930OsAffx.10039.1.S1_at1/118+10991414..10994333retrotransposon protein, putative, unclassified
LOC_Os08g17940OsAffx.3761.1.S1_x_at1/118+10997059..11000135hypothetical protein
LOC_Os08g17950NANA8+11004626..11005114retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g17960OsAffx.17054.1.S1_at1/118+11009766..11012993hypothetical protein
LOC_Os08g17960OsAffx.30032.3.S1_at1/118+11009766..11012993hypothetical protein
LOC_Os08g17970OsAffx.17057.1.S1_at11/118+11015153..11015431hypothetical protein
LOC_Os08g17980NANA8+11015728..11016339Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os08g17990OsAffx.29260.1.S1_at1/118+11019160..11025246retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39795.1.S1_at--210--4791Chr09:11091185..11091209 (25 bp)
GCTCCACTCAGCTCCCTGGAAGAAA
NONE
Os.39795.1.S1_at--441--4731Chr09:11089785..11089809 (25 bp)
GCTGTGTAATATTAGCATCTATGTT
NONE
Os.39795.1.S1_at--357--6511Chr09:11089651..11089675 (25 bp)
GATATATTAATCTCAATCGGATCCA
NONE
Os.39795.1.S1_at--177--3191Chr09:11089638..11089662 (25 bp)
CAATCGGATCCAAGTTAATAGTTTT
NONE
Os.39795.1.S1_at--741--10831Chr09:11089615..11089639 (25 bp)
TTGGGACCCGACAGCATATATATGA
NONE
Os.39795.1.S1_at--416--5531Chr09:11089592..11089616 (25 bp)
GAAAACTGCAGATTTTTGAGCACAA
NONE
Os.39795.1.S1_at--938--10371Chr09:11089579..11089603 (25 bp)
TTTTGAGCACAATATGGAGTTCTAT
NONE
Os.39795.1.S1_at--1137--3091Chr09:11089569..11089593 (25 bp)
AATATGGAGTTCTATTGAATCGACA
NONE
Os.39795.1.S1_at--229--6472Chr08:18980481..18980505 (25 bp)
GATAAGTTCGATAAAGAGCCAAAGT
NONE
Os.39795.1.S1_at--845--40710Chr12:189250..189274 (25 bp)
GAGCCAAAGTTTCTTAGCCGATTAC
NONE
Os.39795.1.S1_at--515--11923Chr12:189257..189278 (22 bp)
AGTTTCTTAGCCGATTACAAAACAT
NONE
Target Sequence 
GCTCCACTCAGCTCCCTGGAAGAAACAGAAGAGAAGAAACGAAGGAAGAAGAAGAAGAAAATAAGAAAAAGAAAGGAAGA
TTGACGGATTTGGGTGAAGAGGAGGACCCCTATGACTATTACTATGATGACCCTGATAACTTAGAAAATCCTTAGAGGTT
ATACCTTCCTAGTTAGAATGTACTAGAACTTCCGCTGTGTAATATTAGCATCTATGTTTAATTAGGTGAGTACCTACCCT
TGTAAAACCCCTAGTATTGTAAACTTTATCGTATGCAATGAAGAACCAGCTGTATTACATGTATCAATATTTACTGATCC
AGGGATTGATATATTAATCTCAATCGGATCCAAGTTAATAGTTTTGGGACCCGACAGCATATATATGAAAACTGCAGATT
TTTGAGCACAATATGGAGTTCTATTGAATCGACATAAAAGTTATTAAGATAAGTTCGATAAAGAGCCAAAGTTTCTTAGC
CGATTACAAAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39795.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis