Browse Element(s) Details


Os.29747.1.S1_s_at

Description gb:AK109830.1
DB_XREF= gi:32995039
TID=Os.29747.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29747 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0455H0310.31 (P0455H0310.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-C02, full insert sequence.
FL= gb:AK109830.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g225704/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22534Os.30694.3.S1_x_at11/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.30694.1.S1_at11/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.30694.2.S1_at10/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534OsAffx.22627.1.S1_at10/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.7923.1.S1_x_at6/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.32421.1.A1_at1/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22550OsAffx.22699.1.S1_x_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.16111.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.20615.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.10039.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22560OsAffx.22250.2.S1_x_at11/117+12692786..12695518hypothetical protein
LOC_Os07g22570Os.34643.1.S1_at11/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22570Os.29747.1.S1_s_at4/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22570Os.29747.1.S1_at1/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22580Os.32592.1.S1_at11/117+12703673..12706326RhoGAP domain containing protein, expressed
LOC_Os07g22580Os.51549.1.S1_at1/117+12703673..12706326RhoGAP domain containing protein, expressed
LOC_Os07g22590OsAffx.16363.2.S1_at11/117+12708674..12711669hAT family dimerisation domain containing protein
LOC_Os07g22590OsAffx.16363.1.S1_x_at11/117+12708674..12711669hAT family dimerisation domain containing protein
LOC_Os07g22590OsAffx.16363.1.S1_at11/117+12708674..12711669hAT family dimerisation domain containing protein
LOC_Os07g22590OsAffx.4116.1.S1_x_at1/117+12708674..12711669hAT family dimerisation domain containing protein
LOC_Os07g22600Os.4599.1.S1_at10/117+12714877..12721201Spermidine synthase 1, putative, expressed
LOC_Os07g22610Os.38395.3.S1_x_at11/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22610Os.38395.2.S1_x_at9/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22610Os.38395.4.S1_x_at4/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22610Os.38395.1.S1_at1/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22610Os.38395.5.S1_at1/117+12721651..12728343transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29747.1.S1_s_at--764--6171Chr01:18249226..18249250 (25 bp)
GAGGAGAAGCCGCAGACCGTCAATC
NONE
Os.29747.1.S1_s_at--115--7091Chr01:18249208..18249232 (25 bp)
GTCAATCCCTTCATCGGCGTTGCAA
NONE
Os.29747.1.S1_s_at--276--491Chr01:18249196..18249220 (25 bp)
ATCGGCGTTGCAACCCGCCGGAAAG
NONE
Os.29747.1.S1_s_at--878--5411Chr01:18249152..18249176 (25 bp)
GAAGCCGCCGCTTTTGGAAGCTCGT
NONE
Os.29747.1.S1_s_at--1070--8391Chr01:18249123..18249147 (25 bp)
GGCCGTTTTCTGTCGTCGATTGTCG
NONE
Os.29747.1.S1_s_at--1138--1772Chr07:12698510..12698534 (25 bp)
ACCGGTGGGTTCCTCTCGTCGTGCT
LOC_Os07g22570
Os.29747.1.S1_s_at--1041--7191Chr01:18249070..18249094 (25 bp)
GTCGTGCTCGTTGCGATGGTGCTCT
NONE
Os.29747.1.S1_s_at--691--6252Chr07:12698479..12698503 (25 bp)
GATGGTGCTCTCTGTTTGCGCCGTT
LOC_Os07g22570
Os.29747.1.S1_s_at--634--8772Chr07:12698467..12698491 (25 bp)
TGTTTGCGCCGTTGTGCCTTCGTTC
LOC_Os07g22570
Os.29747.1.S1_s_at--784--3932Chr07:12698440..12698464 (25 bp)
CGGCGGTTGTGTGGTCCAGAACCAT
LOC_Os07g22570
Os.29747.1.S1_s_at--723--7791Chr01:18249005..18249029 (25 bp)
GGTCCAGAACCATGCCCGGCAGTGA
NONE
Target Sequence 
GAGGAGAAGCCGCAGACCGTCAATCCCTTCATCGGCGTTGCAACCCGCCGGAAAGCCGTCGTCGCCGTCAACCCGAAGCC
GCCGCTTTTGGAAGCTCGTCGCCGGCCGTTTTCTGTCGTCGATTGTCGTCGCCGTCACCACCGGTGGGTTCCTCTCGTCG
TGCTCGTTGCGATGGTGCTCTCTGTTTGCGCCGTTGTGCCTTCGTTCGCCGGCGGTTGTGTGGTCCAGAACCATGCCCGG
CAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29747.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis