Browse Element(s) Details


Os.4599.1.S1_at

Description gb:AK099606.1
DB_XREF= gi:32984815
TID=Os.4599.1
CNT=38
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4599 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Spermidine synthase 1 (Putrescine aminopropyltransferase 1, SPDSY 1) (P0492E07.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013048E04, full insert sequence.
FL= gb:AK060916.1 gb:AK099606.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2260010/11Spermidine synthase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22550OsAffx.22699.1.S1_x_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.16111.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.20615.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.10039.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22560OsAffx.22250.2.S1_x_at11/117+12692786..12695518hypothetical protein
LOC_Os07g22570Os.34643.1.S1_at11/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22570Os.29747.1.S1_s_at4/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22570Os.29747.1.S1_at1/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22580Os.32592.1.S1_at11/117+12703673..12706326RhoGAP domain containing protein, expressed
LOC_Os07g22580Os.51549.1.S1_at1/117+12703673..12706326RhoGAP domain containing protein, expressed
LOC_Os07g22590OsAffx.16363.2.S1_at11/117+12708674..12711669hAT family dimerisation domain containing protein
LOC_Os07g22590OsAffx.16363.1.S1_x_at11/117+12708674..12711669hAT family dimerisation domain containing protein
LOC_Os07g22590OsAffx.16363.1.S1_at11/117+12708674..12711669hAT family dimerisation domain containing protein
LOC_Os07g22590OsAffx.4116.1.S1_x_at1/117+12708674..12711669hAT family dimerisation domain containing protein
LOC_Os07g22600Os.4599.1.S1_at10/117+12714877..12721201Spermidine synthase 1, putative, expressed
LOC_Os07g22610Os.38395.3.S1_x_at11/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22610Os.38395.2.S1_x_at9/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22610Os.38395.4.S1_x_at4/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22610Os.38395.1.S1_at1/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22610Os.38395.5.S1_at1/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22620NANA7+12729827..12734933retrotransposon, putative, centromere-specific
LOC_Os07g22640Os.16249.2.S1_s_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.1.S1_a_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.1.S1_s_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.2.S1_x_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006596biological_processpolyamine biosynthesis
GO:0008295biological_processspermidine biosynthesis
GO:0005737cellular_componentcytoplasm
GO:0004766molecular_functionspermidine synthase activity
GO:0016768molecular_functionspermine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4599.1.S1_at--312--6951Chr07:12715574..12715598 (25 bp)
GTAGCTAATTGTCGCCAAGTTTTTA
LOC_Os07g22600
Os.4599.1.S1_at--100--8591Chr07:12715418..12715442 (25 bp)
TGGTTTTATGCTTTGCTCCACCGAG
LOC_Os07g22600
Os.4599.1.S1_at--1106--7551Chr07:12715393..12715417 (25 bp)
GGGCCTACTGTTGATTTCCAGCATC
LOC_Os07g22600
Os.4599.1.S1_at--1011--1211Chr07:12715233..12715338 (25 bp)
AGTTCTACAATTCCGAGATCCACTC
LOC_Os07g22600
Os.4599.1.S1_at--189--171Chr07:12715202..12715226 (25 bp)
ATTTTGTTTGCCGTCTTTTGCGAAG
LOC_Os07g22600
Os.4599.1.S1_at--890--5851Chr07:12715137..12715161 (25 bp)
GAGCCCAAGGCCAACTGGACTGGAA
LOC_Os07g22600
Os.4599.1.S1_at--180--1951Chr07:12715119..12715143 (25 bp)
ACTGGAATCCCTCCGACAAGAGATT
LOC_Os07g22600
Os.4599.1.S1_at--651--7031Chr07:12715036..12715060 (25 bp)
GTAAACGGTTATCCAAGTGCTTTTG
LOC_Os07g22600
Os.4599.1.S1_at--546--3551Chr07:12714962..12714986 (25 bp)
CATCTCCCTTACCATTTACCAAAAT
LOC_Os07g22600
Os.4599.1.S1_at--1062--4731Chr07:12714930..12714954 (25 bp)
GCTGTAGTTTTCATCTGAGGTGCTT
LOC_Os07g22600
Os.4599.1.S1_at--234--5031NONE
GCAGTCAGTCTCATTTTTAGCTCGA
NONE
Target Sequence 
GTAGCTAATTGTCGCCAAGTTTTTAAAGGCTCAGTGAATTATGCTTGGACAACAGTACCAACATACCCTAGTGGTGTTAT
TGGTTTTATGCTTTGCTCCACCGAGGGGCCTACTGTTGATTTCCAGCATCCTATTTTTAACATTGAGGATAATGAGTTCT
CAACAAAATCGAAAGGACCACTTAAGTTCTACAATTCCGAGATCCACTCAGCATCATTTTGTTTGCCGTCTTTTGCGAAG
AGAGTCATTGGATCCAAGGCCAACTAGATCAAAGATCACTGAGCCCAAGGCCAACTGGACTGGAATCCCTCCGACAAGAG
ATTTGGTTGTAGCAGAAAGAGCAATGACCCCTTTTTTCCCATTTAAATAAAAATTGGAGATGTAAACGGTTATCCAAGTG
CTTTTGAATTTTGTCTCAGTATGAGAACGTTTTGTATTTGGTAACTGTTTTCCNCGCATCTCCCTTACCATTTACCAAAA
TGAGTATTGCTGTAGTTTTCATCTGAGGTGCTTNTNGAATTCTCGCAGTCAGTCTCATTTTTAGCTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4599.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis