Browse Element(s) Details


Os.16249.1.S1_s_at

Description gb:AK060230.1
DB_XREF= gi:32970248
TID=Os.16249.1
CNT=23
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.16249 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative CaLB (calcium-dependent lipid binding) protein (P0492E07.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-002-H02, full insert sequence.
FL= gb:AK060230.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2264011/11calcium-dependent lipid-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22600Os.4599.1.S1_at10/117+12714877..12721201Spermidine synthase 1, putative, expressed
LOC_Os07g22610Os.38395.3.S1_x_at11/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22610Os.38395.2.S1_x_at9/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22610Os.38395.4.S1_x_at4/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22610Os.38395.1.S1_at1/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22610Os.38395.5.S1_at1/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22620NANA7+12729827..12734933retrotransposon, putative, centromere-specific
LOC_Os07g22640Os.16249.2.S1_s_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.1.S1_a_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.1.S1_s_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.2.S1_x_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22650Os.50124.1.S1_at11/117+12762046..12765019xylulose kinase like protein, putative, expressed
LOC_Os07g22650Os.48012.1.S1_x_at8/117+12762046..12765019xylulose kinase like protein, putative, expressed
LOC_Os07g22660OsAffx.28541.2.S1_s_at11/117+12767439..12769147hypothetical protein
LOC_Os07g22670Os.31679.1.S1_at11/117+12770549..12772592mTERF family protein, expressed
LOC_Os07g22680Os.32997.1.S1_at11/117+12775367..12776343Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g22690OsAffx.28542.1.S1_at11/117+12779809..12780135hypothetical protein
LOC_Os07g22700Os.17328.1.S1_at11/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700Os.17328.2.S1_x_at10/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700Os.52782.1.S1_at1/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16249.1.S1_s_at--932--2631Chr07:12758672..12758696 (25 bp)
AACCTTCTGCGTGACTTGATGTACA
LOC_Os07g22640
Os.16249.1.S1_s_at--1008--4651Chr07:12758680..12758704 (25 bp)
GCGTGACTTGATGTACAGTGATTGC
LOC_Os07g22640
Os.16249.1.S1_s_at--410--7031Chr07:12758692..12758716 (25 bp)
GTACAGTGATTGCAATGGACATCGC
LOC_Os07g22640
Os.16249.1.S1_s_at--1161--8991Chr07:12758702..12758726 (25 bp)
TGCAATGGACATCGCATGTTCAGTT
LOC_Os07g22640
Os.16249.1.S1_s_at--1087--1232Chr07:12758723..12758747 (25 bp)
AGTTGCGTGTTAATTCTGTTTGATA
LOC_Os07g22640
Os.16249.1.S1_s_at--306--6471Chr07:12758744..12758768 (25 bp)
GATATAAACTTGTGATACCTAGAAT
LOC_Os07g22640
Os.16249.1.S1_s_at--1011--10011Chr07:12758763..12758787 (25 bp)
TAGAATTATAGGGTTGCATACCATG
LOC_Os07g22640
Os.16249.1.S1_s_at--571--4951Chr07:12758778..12758802 (25 bp)
GCATACCATGCATTTCAGTGTTCTG
LOC_Os07g22640
Os.16249.1.S1_s_at--332--191Chr07:12758789..12758813 (25 bp)
ATTTCAGTGTTCTGGCACCGTCGGT
LOC_Os07g22640
Os.16249.1.S1_s_at--970--8231Chr07:12758802..12758826 (25 bp)
GGCACCGTCGGTGTCAATTATATGA
LOC_Os07g22640
Os.16249.1.S1_s_at--989--10411Chr07:12758819..12758843 (25 bp)
TTATATGACCATCTGTTGCTTTTTT
LOC_Os07g22640
Target Sequence 
AACCTTCTGCGTGACTTGATGTACAGTGATTGCAATGGACATCGCATGTTCAGTTGCGTGTTAATTCTGTTTGATATAAA
CTTGTGATACCTAGAATTATAGGGTTGCATACCATGCATTTCAGTGTTCTGGCACCGTCGGTGTCAATTATATGACCATC
TGTTGCTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16249.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis