CREP Browser

Os.52782.1.S1_at

Description

gb:AK069229.1
DB_XREF= gi:32979253
TID=Os.52782.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52782 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012H21, full insert sequence.
FL= gb:AK069229.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g44440	4/11	Cyclic nucleotide-gated ion channel 9, putative, expressed
LOC_Os07g11890	1/11	Cytochrome P450 family protein
LOC_Os11g28184	1/11	expressed protein
LOC_Os03g02830	1/11	LEM3 family/CDC50 family protein, expressed
LOC_Os11g08590	1/11	expressed protein
LOC_Os01g51550	1/11	Peroxidase family protein
LOC_Os09g07320	1/11	expressed protein
LOC_Os01g16370	1/11	NB-ARC domain containing protein, expressed
LOC_Os03g16880	1/11	Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g28630	1/11	retrotransposon protein, putative, unclassified
LOC_Os10g38834	1/11	no apical meristem, putative, expressed
LOC_Os05g14850	1/11	hypothetical protein
LOC_Os06g13570	1/11	expressed protein
LOC_Os04g36030	1/11	AIG1 family protein
LOC_Os11g01460	1/11	hypothetical protein
LOC_Os10g32570	1/11	tRNA synthetase class I family protein, putative, expressed
LOC_Os07g11020	1/11	Helix-loop-helix DNA-binding domain containing protein
LOC_Os05g11770	1/11	Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os03g28120	1/11	hypothetical protein
LOC_Os05g41172	1/11	YDG/SRA domain containing protein, expressed
LOC_Os07g40974	1/11	NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g22700	1/11	mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os03g19480	1/11	Polycomb protein EZ3, putative, expressed
LOC_Os05g04560	1/11	expressed protein
LOC_Os07g31490	1/11	expressed protein
LOC_Os04g36859	1/11	signal peptidase complex 25 kDa subunit, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g44400	Os.28943.1.S1_x_at	1/11	3	+	24932818..24935988	retrotransposon protein, putative, unclassified
LOC_Os03g44410	OsAffx.13341.1.S1_at	11/11	3	+	24949062..24949907	hypothetical protein
LOC_Os03g44420	Os.14365.1.S1_at	11/11	3	+	24950778..24955159	Cell division protein ftsZ, putative, expressed
LOC_Os03g44430	Os.47974.1.A1_at	11/11	3	+	24955821..24957685	expressed protein
LOC_Os03g44440	Os.52782.1.S1_at	4/11	3	+	24958105..24961677	Cyclic nucleotide-gated ion channel 9, putative, expressed
LOC_Os03g44450	Os.55555.1.S1_at	11/11	3	+	24963441..24964569	expressed protein
LOC_Os03g44450	Os.55555.1.S1_x_at	11/11	3	+	24963441..24964569	expressed protein
LOC_Os03g44450	Os.5287.1.S1_at	10/11	3	+	24963441..24964569	expressed protein
LOC_Os03g44460	OsAffx.32166.1218.S1_x_at	3/11	3	+	24975872..24976942	expressed protein
LOC_Os03g44470	NA	NA	3	+	24978534..24983551	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0001708	biological_process	cell fate specification
GO:0006260	biological_process	DNA replication
GO:0006423	biological_process	cysteinyl-tRNA aminoacylation
GO:0006457	biological_process	protein folding
GO:0006508	biological_process	proteolysis
GO:0006626	biological_process	protein targeting to mitochondrion
GO:0006813	biological_process	potassium ion transport
GO:0006952	biological_process	defense response
GO:0009408	biological_process	response to heat
GO:0009613	biological_process	response to pest, pathogen or parasite
GO:0009615	biological_process	response to virus
GO:0009618	biological_process	response to pathogenic bacteria
GO:0009626	biological_process	hypersensitive response
GO:0009718	biological_process	anthocyanin biosynthesis
GO:0009737	biological_process	response to abscisic acid stimulus
GO:0009809	biological_process	lignin biosynthesis
GO:0009813	biological_process	flavonoid biosynthesis
GO:0009957	biological_process	epidermal cell fate specification
GO:0009960	biological_process	endosperm development
GO:0009964	biological_process	negative regulation of flavonoid biosynthesis
GO:0009965	biological_process	leaf morphogenesis
GO:0016571	biological_process	histone methylation
GO:0040029	biological_process	regulation of gene expression, epigenetic
GO:0042391	biological_process	regulation of membrane potential
GO:0045449	biological_process	regulation of transcription
GO:0005634	cellular_component	nucleus
GO:0005739	cellular_component	mitochondrion
GO:0005743	cellular_component	mitochondrial inner membrane
GO:0005744	cellular_component	mitochondrial inner membrane presequence translocase complex
GO:0005829	cellular_component	cytosol
GO:0005886	cellular_component	plasma membrane
GO:0009543	cellular_component	thylakoid lumen (sensu Viridiplantae)
GO:0016020	cellular_component	membrane
GO:0019897	cellular_component	extrinsic to plasma membrane
GO:0042406	cellular_component	extrinsic to endoplasmic reticulum membrane
GO:0000166	molecular_function	nucleotide binding
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity
GO:0004022	molecular_function	alcohol dehydrogenase activity
GO:0004601	molecular_function	peroxidase activity
GO:0004817	molecular_function	cysteine-tRNA ligase activity
GO:0005216	molecular_function	ion channel activity
GO:0005242	molecular_function	inward rectifier potassium channel activity
GO:0005267	molecular_function	potassium channel activity
GO:0005515	molecular_function	protein binding
GO:0005516	molecular_function	calmodulin binding
GO:0005524	molecular_function	ATP binding
GO:0008168	molecular_function	methyltransferase activity
GO:0008234	molecular_function	cysteine-type peptidase activity
GO:0009003	molecular_function	signal peptidase activity
GO:0009985	molecular_function	dihydroflavonol(thiole) lyase activity
GO:0015462	molecular_function	protein-transporting ATPase activity
GO:0016491	molecular_function	oxidoreductase activity
GO:0016614	molecular_function	oxidoreductase activity, acting on CH-OH group of donors
GO:0019825	molecular_function	oxygen binding
GO:0030551	molecular_function	cyclic nucleotide binding
GO:0042054	molecular_function	histone methyltransferase activity
GO:0045551	molecular_function	cinnamyl-alcohol dehydrogenase activity
GO:0045552	molecular_function	dihydrokaempferol 4-reductase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.52782.1.S1_at--1045--121	1	Chr03:24961352..24961376 (25 bp)	AGTTCCGCCGGATGCACAGCAAGCA	LOC_Os03g44440
Os.52782.1.S1_at--978--271	1	Chr03:24961372..24961396 (25 bp)	AAGCAGGTGCAGCACACCTTCCGGT	LOC_Os03g44440
Os.52782.1.S1_at--446--673	1	Chr03:24961395..24961419 (25 bp)	GTTCTACTCCCAGCAGTGGCGGACG	LOC_Os03g44440
Os.52782.1.S1_at--89--337	1	NONE	CACCTCAAGCGGAGGGCGATCGGCT	NONE
Os.52782.1.S1_at--521--577	1	Chr03:24961615..24961639 (25 bp)	GACGAGGTCCTCATGATGCCCATGC	LOC_Os03g44440
Os.52782.1.S1_at--880--19	1	Chr03:24961658..24961682 (25 bp)	ATTTCGGCGCCGATTACTGATCAGC	NONE
Os.52782.1.S1_at--219--387	1	Chr03:24961674..24961698 (25 bp)	CTGATCAGCCGGCAAATGCATGTGA	NONE
Os.52782.1.S1_at--797--299	1	Chr03:24961734..24961758 (25 bp)	AATGTTGTCGGATTTAGCTGTGCAG	NONE
Os.52782.1.S1_at--955--1045	1	Chr03:24961747..24961771 (25 bp)	TTAGCTGTGCAGTGCAGTACTCCCT	NONE
Os.52782.1.S1_at--662--199	313	Chr12:2465879..2465909 (25 bp)	ACTCCCTCCATTTGATAGTCATATT	NONE
Os.52782.1.S1_at--87--303	48	Chr12:9274813..9274837 (25 bp)	AATGCCCATGTAGCCAATCATGTGT	NONE

Target Sequence

AGTTCCGCCGGATGCACAGCAAGCAGGTGCAGCACACCTTCCGGTTCTACTCCCAGCAGTGGCGGACGTGGGCGGCCACC
TACATCCAGGCCGCCTGGAGGCGCCACCTCAAGCGGAGGGCGATCGGCTCGTCGACGGGGCTCAAGACCACCATGCTGGT
GTCGCGCTTCGCCGCCAACGCCATGCGCGGCGTCCACCGGCAGCGATCCAGGCGGGCCGACGAGGTCCTCATGATGCCCA
TGCCCAAGCCCTCCGAGCCTGATTTCGGCGCCGATTACTGATCAGCCGGCAAATGCATGTGAATTAGCGCTTATGAAATG
GGTGTAAATTGTGAGTAAATGTTGTCGGATTTAGCTGTGCAGTGCAGTACTCCCTCCATTTGATAGTCATATTTCATCTT
GGCACACAGACTAAGGATAAGTAATTCTACTTATCATCTATTTAAATGTGCTACTAGTCATTCCTCGTAAACAAGTGATT
CATTAATATTTACATTTCTCAATGCCCATGTAGCCAATCATGTGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis

Browse Element(s) Details